PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 294aa MW: 32070.8 Da PI: 8.3957

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043571.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	145	199	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k HL.SW.v1.0.G043571.1 145 RKKLRLTKEQSALLEESFKQHSTLNPRQKQALARQLNLRPRQVEVWFQNRRARTK 199 788899***********************************************98 PP
2	HD-ZIP_I/II	124.8	3.9e-40	145	234	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ HL.SW.v1.0.G043571.1 145 RKKLRLTKEQSALLEESFKQHSTLNPRQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK- 232 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 +l HL.SW.v1.0.G043571.1 233 AL 234 54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-18	131	195	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-19	134	202	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.54	141	201	IPR001356	Homeobox domain
SMART	SM00389	1.9E-15	143	205	IPR001356	Homeobox domain
Pfam	PF00046	6.3E-16	145	199	IPR001356	Homeobox domain
CDD	cd00086	6.52E-17	145	202	No hit	No description
PROSITE pattern	PS00027	0	176	199	IPR017970	Homeobox, conserved site
SMART	SM00340	1.1E-25	201	244	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.7E-10	201	235	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MGFDDLCNTG LDLGLGFTAS AASTKKPSTN STTTSATTTS FEPSLTLGLS GDPYNSSNNA 60 RKISTINIDV NKGGGTTCHE ETVNNNNSNN NIDLYRQASP HSAVSSFSGG GGRVKRERDL 120 SSEEIEVEKV SSRISDEDDD GPNARKKLRL TKEQSALLEE SFKQHSTLNP RQKQALARQL 180 NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE NRRLQKELQE LKALKLSQPL 240 YMHMPAATLT MCPSCERIGG VGVGAGDGAS KSPFSMASKP HFYNPFTNPS AAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	201	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970499.1	1e-152	PREDICTED: homeobox-leucine zipper protein HAT22
Swissprot	P46604	1e-101	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2P5F2Y1	1e-171	A0A2P5F2Y1_TREOI; Octamer-binding transcription factor
STRING	EOX91792	1e-151	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-84	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]