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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G043490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YB | ||||||||
Protein Properties | Length: 149aa MW: 16525.5 Da PI: 5.4204 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 49.2 | 1.3e-15 | 8 | 105 | 5 | 97 |
NF-YB 5 drflPianvsrimkkvlPana.....kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 ++lP a v r++k l a + kda e + fi ++++ a+d c++ kr+ti+gdd+l al ++ f ++++pl++ l HL.SW.v1.0.G043490.1 8 AEELPKAIVRRVVKDKLSHCAedtdfNVHKDALLAFSESARIFIHYLSATANDICKESKRQTISGDDVLKALEEIEFSEFLNPLNASLV 96 5789***********998765223336999*********************************************************** PP NF-YB 89 kyrelegek 97 ++r+ ++ek HL.SW.v1.0.G043490.1 97 EFRKKKAEK 105 ***998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.0E-33 | 7 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.7E-11 | 10 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.04E-25 | 11 | 130 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEKAVAEAEE LPKAIVRRVV KDKLSHCAED TDFNVHKDAL LAFSESARIF IHYLSATAND 60 ICKESKRQTI SGDDVLKALE EIEFSEFLNP LNASLVEFRK KKAEKKKGAS QTKDVKKKRK 120 LEEPSTDKNE GSESKQDEND AENGVGGD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 120 | KKAEKKKGASQTKDVKKKRKL |
2 | 104 | 119 | KKKGASQTKDVKKKRK |
3 | 115 | 120 | KKKRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089818.1 | 1e-72 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A2P5BHB9 | 1e-84 | A0A2P5BHB9_TREOI; Transcription initiation factor | ||||
STRING | XP_010089818.1 | 4e-72 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 3e-44 | nuclear factor Y, subunit B11 |