PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G043051.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 891aa MW: 102205 Da PI: 6.916

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043051.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.5	3.9e-27	74	161	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r+ +++t+Cka+++vk+++d+kw ++++ +eHnHel HL.SW.v1.0.G043051.1 74 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDGG---SSRRPGVKKTDCKASMHVKRRSDEKWIIHEFIKEHNHEL 159 5**************************************999888...77788899****************************9 PP FAR1 90 ap 91 p HL.SW.v1.0.G043051.1 160 LP 161 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-24	74	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-26	281	374	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.249	561	597	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.6E-7	562	596	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-8	572	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 891 aa Download sequence Send to blast
MDRSQNPVEI VMNSRDNANG VRMNGKMIDV VDGVHSRDAG LVSSPKRDLV MFGGDTDFEP 60 RNGIEFESNE AAYSFYQEYA KSMGFTTSIK NSRRSKKSKE FIDAKFACSR YGVTPESDGG 120 SSRRPGVKKT DCKASMHVKR RSDEKWIIHE FIKEHNHELL PALAYHFRIH RNVKLAEKNN 180 IDILHAVSER TRKMYVEMSR KSGGYQNAGS VRAEMNFQFD KGRYLGLDEG DAQVMLEYFK 240 RIQKENPNFF FAIDLNEEQR LRNLFWVDAK SRTDYVSFND VVSFDTSYIK INDKLPFAPF 300 VGVNHHFQSM LLGCAMVADE TKSTFVWLMK TWLRAMHGQA PKVIITDQDK ALKAAIEEVF 360 PDTRHCYSLW QILEKIPETL AHVIKLHENF LPKFHKCIFQ SSTSEQFDMR WWKMVTRFEL 420 QDDEWIRTLY DDRKKWVPSC LGDTFFAGMC TTQRSESMNS FFDKYIHKKI TLKEFVKQYG 480 AILQNRYEEE EIADFDTLHK QPALKSPSPW EKQMSTVYTH AVFKKFQVEV LGVVGCQPKK 540 ESGDETTSIF RVQDCEKDEY FFVTWNETKS DVSCSCHLFE YKGFLCRHAL IVLQMCGLSS 600 IPPQYILKRW TKDAKGRQST AEGTGRIQSR VQRYNELCKW AIELSEEGSL SEDTYNVAFR 660 ALVEALKNCV NVNNSINTAA ESSSNFLTIC ETEEENQGSL ATKTVRKRNT NRKRKVQAEP 720 DPALVEAQDS LPQMDNLSSD GITLNGYYGA QQNVQGLLNL MEPPNDSYYV NPQSMQGLGQ 780 LNSIAPGHDG YFGTQQSIHG LAQLDFRPQT SFSYSLPDDQ RLRSSHCNNG CMLDLVDVLP 840 QNDMLNSNQA RNITLMEEFR LTILTCVKEA FEEAKIRGVR FTVAESLVEV *

Sequence ? help Back to Top

Protein Sequence Length: 891 aa Download sequence Send to blast

MDRSQNPVEI VMNSRDNANG VRMNGKMIDV VDGVHSRDAG LVSSPKRDLV MFGGDTDFEP  60
RNGIEFESNE AAYSFYQEYA KSMGFTTSIK NSRRSKKSKE FIDAKFACSR YGVTPESDGG  120
SSRRPGVKKT DCKASMHVKR RSDEKWIIHE FIKEHNHELL PALAYHFRIH RNVKLAEKNN  180
IDILHAVSER TRKMYVEMSR KSGGYQNAGS VRAEMNFQFD KGRYLGLDEG DAQVMLEYFK  240
RIQKENPNFF FAIDLNEEQR LRNLFWVDAK SRTDYVSFND VVSFDTSYIK INDKLPFAPF  300
VGVNHHFQSM LLGCAMVADE TKSTFVWLMK TWLRAMHGQA PKVIITDQDK ALKAAIEEVF  360
PDTRHCYSLW QILEKIPETL AHVIKLHENF LPKFHKCIFQ SSTSEQFDMR WWKMVTRFEL  420
QDDEWIRTLY DDRKKWVPSC LGDTFFAGMC TTQRSESMNS FFDKYIHKKI TLKEFVKQYG  480
AILQNRYEEE EIADFDTLHK QPALKSPSPW EKQMSTVYTH AVFKKFQVEV LGVVGCQPKK  540
ESGDETTSIF RVQDCEKDEY FFVTWNETKS DVSCSCHLFE YKGFLCRHAL IVLQMCGLSS  600
IPPQYILKRW TKDAKGRQST AEGTGRIQSR VQRYNELCKW AIELSEEGSL SEDTYNVAFR  660
ALVEALKNCV NVNNSINTAA ESSSNFLTIC ETEEENQGSL ATKTVRKRNT NRKRKVQAEP  720
DPALVEAQDS LPQMDNLSSD GITLNGYYGA QQNVQGLLNL MEPPNDSYYV NPQSMQGLGQ  780
LNSIAPGHDG YFGTQQSIHG LAQLDFRPQT SFSYSLPDDQ RLRSSHCNNG CMLDLVDVLP  840
QNDMLNSNQA RNITLMEEFR LTILTCVKEA FEEAKIRGVR FTVAESLVEV *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019196.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A251Q247	0.0	A0A251Q247_PRUPE; Uncharacterized protein
STRING	XP_008229655.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]