PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043040.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 663aa    MW: 73530.2 Da    PI: 9.5535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043040.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07563612147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  HL.SW.v1.0.G043040.1 563 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 612
                           678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.14E-7368458IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.654558617IPR017930Myb domain
SMARTSM007173.5E-7562615IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-10563613IPR009057Homeodomain-like
CDDcd116601.55E-16564614No hitNo description
SuperFamilySSF466892.73E-15564645IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPAMP RATRSARRRG TVKKRVEENQ MCAFDLLATV AGNLLLEKES  60
SPTSSNTLNQ KDKCVIVDQD GHDGNVPLKV EPCDQGTRDR KPFVSEHESQ APNVNHSSKE  120
SSFPRNDDHS SFTSIMTTSN CSERLVAINS DTSKIKNEVG SFCSQIEGLS MYRESGGCKL  180
EGETKTLVKD ESNNTGKVLI GTAADMRSSE YPTVFKGKPL VLPSSDCSAK APLCGDHIPQ  240
TSLPSTRDDV KVVSRDDDEK SSGCTHPSTT TRYFKRAPRI GDRRIRKILA SKYWKVGSKY  300
KDETLSSPDG NIKPSYRSRK DCYKRQRTQM TVPFKKRKLF DHSSVWASDG GTGTSCSVAG  360
QRTSFQRRDS HVKLRIKSFR VPELFIEIPE TATVGSLKRT VMDAVTAILG GGLHIGVLLQ  420
GKKVRDDNIT LLQSGISHDK ELDALGFTLE PNPPQSPPPL CSGDSPHLLP GDAPEILARY  480
PLNQEIVDHV NANVLPEPRV ANLSNFVESD HDSTPSPTDT SADKSTTDSK ALVPIPEMNV  540
EALSVVPALR KSKRSDMAQR RIRRPFSVTE VEALVQAVEK LGTGRWRDVK LRAFDNAKHR  600
TYVDLKDKWK TLVHTARISP QQRRGEPVPQ DLLDRVLTAH AHWSQQQAKQ QLKQQPETCL  660
LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-565476531107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028076.10.0telomere repeat-binding protein 5 isoform X2
SwissprotQ6R0E31e-164TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2P5D6E60.0A0A2P5D6E6_TREOI; Octamer-binding transcription factor
STRINGXP_010106503.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-130TRF-like 2