PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G042895.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 381aa MW: 42084.6 Da PI: 8.1039

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G042895.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	43	104	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss HL.SW.v1.0.G042895.1 43 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 104 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	39	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	44	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MDTAHWPPQG IGVVKPMEGP NNNNSNSNDS NKNMLERRTR PQKDQAVNCP RCNSTNTKFC 60 YYNNYSLTQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSSSSSSST SSPSSLPISL 120 SSKKVAHDHH NDHHLPLPFS FPNTSSTHQQ NPKINHQGQD LNLAFPPSSD HHHHHHHQDY 180 HDHNTFSRFV QVPYTTSDHD PNKINHVNQN PITAASTPTT TTSSVQLSAM ELLKTGMASR 240 GLMSSFMAMP PANNTTTSST MFPSSSNGFS LGGHEFKPNN SSSSLSFDLD HGYGHDHQSG 300 YGSGLEQQQH HHVVQQEING ARLLFPNNDH DHDQDHDMKQ VSTTSTTTTT TTTTHHARGQ 360 GDHNSNTHGY WNGMLGGGSW *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MDTAHWPPQG IGVVKPMEGP NNNNSNSNDS NKNMLERRTR PQKDQAVNCP RCNSTNTKFC  60
YYNNYSLTQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSSSSSSST SSPSSLPISL  120
SSKKVAHDHH NDHHLPLPFS FPNTSSTHQQ NPKINHQGQD LNLAFPPSSD HHHHHHHQDY  180
HDHNTFSRFV QVPYTTSDHD PNKINHVNQN PITAASTPTT TTSSVQLSAM ELLKTGMASR  240
GLMSSFMAMP PANNTTTSST MFPSSSNGFS LGGHEFKPNN SSSSLSFDLD HGYGHDHQSG  300
YGSGLEQQQH HHVVQQEING ARLLFPNNDH DHDQDHDMKQ VSTTSTTTTT TTTTHHARGQ  360
GDHNSNTHGY WNGMLGGGSW *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096797	7e-60	BT096797.1 Soybean clone JCVI-FLGm-21O11 unknown mRNA.
GenBank	DQ857271	7e-60	DQ857271.1 Glycine max Dof21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023912132.1	7e-98	dof zinc finger protein 1-like isoform X1
TrEMBL	A0A2P5DFE1	1e-122	A0A2P5DFE1_PARAD; Zinc finger transcription factor
STRING	XP_008234696.1	5e-88	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-42	Dof family protein