PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042851.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARF
Protein Properties Length: 666aa    MW: 74118.8 Da    PI: 7.227
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042851.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23123224199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF
  HL.SW.v1.0.G042851.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfppldlsAVPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVF 209
                           89****************************995444445..69999******************************************* PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                            +   +++ l+v+++r+
  HL.SW.v1.0.G042851.1 210 LR--ADNGDLCVGIRRA 224
                           *3..478888****996 PP
2Auxin_resp108.38.4e-36274357183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ a+ +++FevvY+Prast+eF+v++  v++a++++++ GmRfkm fetedss++++ +Gt+++ +  +p++Wp+S+Wr+L+
  HL.SW.v1.0.G042851.1 274 AATLAARGQPFEVVYYPRASTPEFCVRAPAVRAAMQIRWCSGMRFKMPFETEDSSRISWfMGTISAAQIDNPIHWPDSPWRLLQ 357
                           688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-36117226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-29120224IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-22121223No hitNo description
SMARTSM010191.2E-22123225IPR003340B3 DNA binding domain
PfamPF023621.3E-21123224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155123225IPR003340B3 DNA binding domain
PfamPF065071.8E-30274357IPR010525Auxin response factor
PROSITE profilePS5174519.544583664IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MIRVMDSGRD PMRRGFEKCL DPQLWHACAG PLVQMPPINS KVLYFPQGHA EHAQGNVDFG  60
NSRIPSHILC KVSAIKFMAD PETDEVYAKM GLTPSRDNSD FDVADEGYLG NNGIENPEKP  120
KSFAKTLTQS DANNGGGFSV PRYCAETIFP PLDLSAVPPV QNILAKDVHG ETWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RADNGDLCVG IRRAKKGIGC GHEYPSVWNP  240
LVGNYGSQYE NRVMGKSGIR DSRGKVKAES VVEAATLAAR GQPFEVVYYP RASTPEFCVR  300
APAVRAAMQI RWCSGMRFKM PFETEDSSRI SWFMGTISAA QIDNPIHWPD SPWRLLQVTW  360
DEPDLLQNVK CVNPWLVELV SSIPAMHPFS PPRKKLRLPQ NPDFALVSHP MPLLPTNFLN  420
SNTPFHCIQG DFPAGIQGAR HAQFGPYPVE LHRNELQQGM HPLGLRQLDI TDPLRNPGGD  480
FMKSTENSGN ISCWLKMGHP NQSLKANEEM KTPHLLLFGQ VILTEEQLSK SSSGENSSSE  540
GNLEKTTNHS DNGSGSTVNS SDGRSPWYKD HHNQRSELHG LETGHCKVFI ESDDVGRTLD  600
LSLLGSYQEL YRKLGDMFGL EEGSGIFKNL LYLDAAGSVK QTGEEPFSEF LKSVRRLTIH  660
TDPRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-772037851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009852.20.0PREDICTED: auxin response factor 18
RefseqXP_017985073.10.0PREDICTED: auxin response factor 18
RefseqXP_017985074.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P5D3Z70.0A0A2P5D3Z7_TREOI; Auxin response factor
STRINGEOY186620.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]