PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042752.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21711.9 Da    PI: 9.8647
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042752.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.17.3e-21448347
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          ++++s rqvtfskRr+g++KKA+EL +LC+aev +++fs+ gk +
  HL.SW.v1.0.G042752.1  4 VKDSSCRQVTFSKRRTGLFKKANELATLCGAEVGILVFSPGGKPF 48
                          7899************************************99855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.175154IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-22153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-23175IPR002100Transcription factor, MADS-box
PfamPF003193.8E-24450IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-111631IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-113152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEMVKDSSCR QVTFSKRRTG LFKKANELAT LCGAEVGILV FSPGGKPFSF GNPNVRYITD  60
RFLRPHLYKQ TANFRSNKHC RDDSSFSGVG AAERMNQLHD SRVKQLGDEK LRGEAIDEEI  120
AKGNKGIGID EMGFEELEKL KEGLEELGEK VKERVVEMEA SSTLLMLSNN NKSLMTGCVK  180
KRSARVRAVA KKSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111011.15e-61agamous-like MADS-box protein AGL29
TrEMBLW9S6V31e-59W9S6V3_9ROSA; Agamous-like MADS-box protein AGL61
STRINGXP_010111011.12e-60(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-31AGAMOUS-like 29