PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042534.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 309aa    MW: 35964.5 Da    PI: 6.0552
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042534.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.16.6e-2025112286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                           Wt+qe+ +Li+a++e++ +l+rg lk  +Weev+  +      + +  +++++qC++k+e+l++ry+++k++ +   s  +s +pyfd 
  HL.SW.v1.0.G042534.1  25 WTHQETVHLIQAYEEKWYSLKRGPLKSSQWEEVAVTVaarcgyEYTEPSKTAIQCRHKMEKLRQRYRAEKNRLSV--S-GVSVWPYFDL 110
                           ***********************************998666666666689********************99997..3.4559*****9 PP

              trihelix  85 le 86 
                           ++
  HL.SW.v1.0.G042534.1 111 MN 112
                           97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-2024114No hitNo description
PROSITE profilePS500906.2142487IPR017877Myb-like domain
SMARTSM005954.1E-632119IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAMATTPPPA AAASVSGKKP QPIPWTHQET VHLIQAYEEK WYSLKRGPLK SSQWEEVAVT  60
VAARCGYEYT EPSKTAIQCR HKMEKLRQRY RAEKNRLSVS GVSVWPYFDL MNRLERGPLP  120
ISARPMIALP YHRDRDREDG EDDEDEEEEN DSGDEGEDGD VIRTKSRSID HILKRPTTVN  180
RFAGEEERGR NVNGFSRVWA EPVTKRPRET VVEEEEYGED DLDGDEESNA KVEFLERRRR  240
RERKREVVLK LAAEIRAFSE RFVGMESMKM EIMKDTERCR REMETKRIEM ILHSQNKIVD  300
SITKAFRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235241ERRRRRE
2237245RRRRERKRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892407.11e-107trihelix transcription factor ASIL1
TrEMBLA0A2P5CIE11e-121A0A2P5CIE1_TREOI; Myb-like domain containing protein
STRINGXP_010110065.11e-88(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.17e-52Trihelix family protein