PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042329.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 389aa    MW: 44279.1 Da    PI: 7.2142
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042329.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05219238120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           + C++C+k+F+r  n++ H+
  HL.SW.v1.0.G042329.1 219 FACSICHKTFNRYNNMQMHM 238
                           78*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.14E-5210242No hitNo description
SMARTSM003550.28219241IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-5219238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.492219246IPR007087Zinc finger, C2H2
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SMARTSM00355190266298IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.68E-5289325No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4290325IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035575303325IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGLWNNNLTN NNTNNNSNNH LQHNNFFFQT PTFIEWLKPI SSSSSSSSYH SSSPPNSSST  60
TSSYSSSTTY PHQDYYVNPQ ISSTNTTTNS LQCLPLLSRL NNDEIKPLKV EEGFEKVTLH  120
IGLPSTTITE AIAAGDNSTE FSDDHHQQHR DDEKIKVVDH LKEEKEEDDR DDDNNEDEEV  180
VVAMKKHNNK SFEYGCSFNM ESRFWIPTPA QILVGPMQFA CSICHKTFNR YNNMQMHMWG  240
HGSEYRKGPD SLKGTQPAAM LRLPCYCCAQ GCKNNINHPR AKPLKDFRTL QTHYKRKHGL  300
KPFHCRKYSC GKTFAVKGDW RTHEKNCGKL WYCTCGSDFK HKRSLKDHIR SFGNGHSPHP  360
SLEGFDHDDK ECVTAGSEDE DLMITARA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089843.11e-162zinc finger protein WIP3
SwissprotQ9SGD11e-125ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2P5FU161e-163A0A2P5FU16_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010089843.11e-161(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-115WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]