PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042191.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 189aa    MW: 20814.8 Da    PI: 10.5356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042191.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.4e-214797155
                   AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          s+++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a++ a+++l+g
  HL.SW.v1.0.G042191.1 47 SHFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDDAARSLRG 97
                          78********.**********883....5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.70E-2047104No hitNo description
PfamPF008473.0E-134797IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2247105IPR016177DNA-binding domain
PROSITE profilePS5103222.23448105IPR001471AP2/ERF domain
SMARTSM003806.9E-3448111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3048105IPR001471AP2/ERF domain
PRINTSPR003672.3E-104960IPR001471AP2/ERF domain
PRINTSPR003672.3E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAVDTLRLRK NSLNSSAGAS AEPRPLAPSP PSPNESQQFR VPALKESHFR GVRKRPWGRF  60
AAEIRDPWKK TRKWLGTFDT AEEAARAYDD AARSLRGPKA KTNFGHGGLA GPIMTAAPPQ  120
SVVVGDCMQL WRQPVYLHSV TPSSAPARSE YKGYKLENVD VVVSEQEKTM GKEKKPFLFD  180
LNLPAPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1936106273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695441e-35KT369544.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023747.11e-80ethylene-responsive transcription factor 8
TrEMBLA0A2P5AN563e-83A0A2P5AN56_PARAD; AP2/ERF transcription factor
STRINGXP_010100082.11e-73(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.18e-23ethylene responsive element binding factor 3