PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GRF

Protein Properties

Length: 417aa MW: 44532.2 Da PI: 9.1887

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G042114.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.8	1.1e-24	85	129	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e HL.SW.v1.0.G042114.1 85 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 129 79****************************************986 PP
2	QLQ	58.1	2.6e-20	28	64	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+ +P++Ll +i+k HL.SW.v1.0.G042114.1 28 GPFTPSQWMELEQQALIYKYITANVAIPSNLLIPIRK 64 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.9E-11	28	64	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.2E-14	29	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.628	29	64	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	85	129	IPR014977	WRC domain
Pfam	PF08879	4.4E-21	86	128	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MAFAGYNSGG LNLNGGNNMY GAIIGAKGPF TPSQWMELEQ QALIYKYITA NVAIPSNLLI 60 PIRKAIDSSV GGWGSFHLGF SNNADPEPGR CRRTDGKKWR CSRDAVADQK YCERHMNRGR 120 HRSRKPVEGQ TGHSVAGATA NANATASKLM PLASSSPSST SVAVSGAGGS SNSLAISNHH 180 LLQQQNTSAT THLNRMQQQN TLGLSLLSKD QNAFLTQSFG LVASDSLLNL AQKNTEARNH 240 QQQQHQQQQH SLRHFIDDWP KTQPNRQALS WPEIDIQADR TQLSISMPLA SSDLFVPSSS 300 SPEKTSLSMS LGVGAGEHVG NRNWIPIAWE NSLMGGPLGE VLHHSNSSNN NNNGSVECKN 360 SSSSSSVLNL MTEGWDNSPP MGSSSPTGVL QKTAFGSLSN SSAGSSPRGE NNKSLD*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MAFAGYNSGG LNLNGGNNMY GAIIGAKGPF TPSQWMELEQ QALIYKYITA NVAIPSNLLI  60
PIRKAIDSSV GGWGSFHLGF SNNADPEPGR CRRTDGKKWR CSRDAVADQK YCERHMNRGR  120
HRSRKPVEGQ TGHSVAGATA NANATASKLM PLASSSPSST SVAVSGAGGS SNSLAISNHH  180
LLQQQNTSAT THLNRMQQQN TLGLSLLSKD QNAFLTQSFG LVASDSLLNL AQKNTEARNH  240
QQQQHQQQQH SLRHFIDDWP KTQPNRQALS WPEIDIQADR TQLSISMPLA SSDLFVPSSS  300
SPEKTSLSMS LGVGAGEHVG NRNWIPIAWE NSLMGGPLGE VLHHSNSSNN NNNGSVECKN  360
SSSSSSVLNL MTEGWDNSPP MGSSSPTGVL QKTAFGSLSN SSAGSSPRGE NNKSLD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM473368	4e-55	AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018833808.1	1e-147	PREDICTED: growth-regulating factor 6-like isoform X1
Swissprot	Q6AWY3	1e-90	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2P5G101	1e-180	A0A2P5G101_TREOI; Growth-regulating factor
STRING	EOY15657	1e-146	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	7e-63	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]