PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041666.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 298aa    MW: 32309.8 Da    PI: 5.2617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041666.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10174221455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  HL.SW.v1.0.G041666.1 174 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 221
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-18168239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-10168225No hitNo description
Gene3DG3DSA:4.10.280.105.6E-18170238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDPPALMNEG SFSNANATFN NLVEIWPFSM NGGGEPGVGL GLRRPLFGQN LASYGDVLGA  60
NIREVSTNDS MSLDQRGNQG DCGGGSRKRR DVEDDSVNKG VSTSSVNGND NGNGYDCDGK  120
RLKTSGGCKE ENGESKTETE PSSGKPGEQS SRLPDPPKQD YIHVRARRGQ ATDSHSLAER  180
ARREKISERM KILQDLVPGC NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRMTP  240
EIDVFPSKDI NLASQFGQQA FEAAGMAFNS QPTREFSRGS SPDWLHMQVG GGFERTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3807412e-74FQ380741.1 Vitis vinifera clone SS0ACG35YM08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022584.11e-149transcription factor BHLH089
RefseqXP_024022585.11e-149transcription factor BHLH089
SwissprotQ69WS34e-78BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2P5BY531e-159A0A2P5BY53_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010098235.11e-145(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-84BIG PETAL P