PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G041110.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 370aa MW: 40712.6 Da PI: 4.6631

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G041110.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	289	329	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq HL.SW.v1.0.G041110.1 289 RKRREKINERLKVLQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 329 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-14	278	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.332	279	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-13	282	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.4E-12	285	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.49E-12	288	333	No hit	No description
Pfam	PF00010	7.9E-8	289	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MEPTLGAISA GEWSSFSGIY CSEETDRNEH HFMASDHHFL AGCGVTNDDH LTIGTSSLDD 60 QIPFTIWPGT SYSHCSSVSE IDNSYTGSFP QGMISSSPYS HPVTWLTSNI SVEFSEECQN 120 ENFFLVDADH SQEWQNQEMS NGTINGEESG GNQLTSAADH FSPHKWECDQ MTVPESTMAS 180 GIISGNSKKR SSSPAEEEPK SKRNVRSRKS KKQLALMSDN EEDGNNAGTD KGHSNSSLSE 240 EQHSNDSLDE ELGERALSLS PKEPTALNLS GKARASRESA TDPQSVYARK RREKINERLK 300 VLQNLVPNGT KVDISTMLEE AVQYVKFLQL QIKLLSSDDL WMYAPLAYNG MDMGMGIGLD 360 HLRLAASRQ*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MEPTLGAISA GEWSSFSGIY CSEETDRNEH HFMASDHHFL AGCGVTNDDH LTIGTSSLDD  60
QIPFTIWPGT SYSHCSSVSE IDNSYTGSFP QGMISSSPYS HPVTWLTSNI SVEFSEECQN  120
ENFFLVDADH SQEWQNQEMS NGTINGEESG GNQLTSAADH FSPHKWECDQ MTVPESTMAS  180
GIISGNSKKR SSSPAEEEPK SKRNVRSRKS KKQLALMSDN EEDGNNAGTD KGHSNSSLSE  240
EQHSNDSLDE ELGERALSLS PKEPTALNLS GKARASRESA TDPQSVYARK RREKINERLK  300
VLQNLVPNGT KVDISTMLEE AVQYVKFLQL QIKLLSSDDL WMYAPLAYNG MDMGMGIGLD  360
HLRLAASRQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	293	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010111528.1	2e-87	transcription factor bHLH84
TrEMBL	A0A2P5EYE1	0.0	A0A2P5EYE1_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010111528.1	8e-87	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF807	33	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	2e-53	bHLH family protein