PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040588.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 594aa    MW: 63838.6 Da    PI: 10.0484
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040588.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-053052123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C+ C+k F r  nL+ H r H
  HL.SW.v1.0.G040588.1 30 FICEVCNKGFQREQNLQLHRRGH 52
                          89*******************88 PP
2zf-C2H213.10.00029106128123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++C+k++  +s+ k H +t+
  HL.SW.v1.0.G040588.1 106 WKCEKCSKRYAVQSDWKAHSKTC 128
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-72952No hitNo description
Gene3DG3DSA:3.30.160.606.6E-62952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00523052IPR015880Zinc finger, C2H2-like
PfamPF121712.9E-53052IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.993052IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035513071101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-594127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.76E-7101126No hitNo description
SMARTSM00355130106126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MAAASSSSVP DPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ  60
KTNKEPKRKV YLCPEPTCVH HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD  120
WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPPNLSA IGANLYGGSN  180
ATSLGLSQLG PQFSALQDQT NQTGDMLRLG GASHHRSAPQ APSSGQFDHG HILSPTSFRA  240
QQQPPAGFFM TAEPNQQQYH HQEDHHHSHH HPHQSQHGFL PNKPFHGLMQ FSEIQSNANN  300
VNPSSGLLIS NHFNAENGTS GGGGGGGEGS NIFSGQIGGD QISSSPVSSL YSTSVQNNHA  360
AAVAAAHMSA TALLQKAAQM GSTSTTNNTA SLLRSFGSSS SSTAGGGQNK PSDRPTMAPA  420
SFGGGGAGGG SSGGGLFGSD NDQSHLQDLM NSFAAAGGNN SMFGGNAFGG YESASRASLE  480
HQDQKLQANS SGAGGISAMN NSIGGGSDRL TRDFLGVGQI VRSVSGGFSK REQQQQQQQH  540
QHRGIIEMVV ALGGKESKKE RKKRKERKKE KEEKKKKKRY YYYITTTTTQ REL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35102163364Zinc finger protein JACKDAW
5b3h_F5e-35102163364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1560565RKKRKE
2562578KRKERKKEKEEKKKKKR
3568577KEKEEKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093356.20.0protein indeterminate-domain 5, chloroplastic isoform X2
SwissprotQ9ZUL31e-128IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2P5E0V00.0A0A2P5E0V0_PARAD; TFIIH C1-like domain containing protein
STRINGXP_010093356.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-109indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]