PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G040524.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 217aa MW: 23768.7 Da PI: 8.2215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G040524.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	150	195	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq HL.SW.v1.0.G040524.1 150 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 195 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.005	144	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-15	147	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.64E-11	148	199	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-14	149	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-9	150	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-13	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
GFSVTRGTGG YGSQGGTNCG PGVSRLKSQL SFTRQDCLSQ ISEVSENVID GMSSENGHHN 60 ASHSFATSFG MDSWDNNTNS IVFSAPQSKR AKNMDGDLYN CLNVLDTQFQ FSLPQTTLEM 120 AAVEKLLHIP EDSVPCKIRA KRGCATHPRS IAERERRTRI SGKLKKLQDL VPNMDKQTSY 180 ADMLDLAVQH IKGLQNQVKK LHTELENCTC GCKQNT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887121.1	1e-131	transcription factor bHLH128 isoform X1
Refseq	XP_015887122.1	1e-131	transcription factor bHLH128 isoform X2
Refseq	XP_015887123.1	1e-131	transcription factor bHLH128 isoform X3
Refseq	XP_023925304.1	1e-131	transcription factor bHLH128-like
Swissprot	Q8H102	4e-78	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2P5FCM9	1e-128	A0A2P5FCM9_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_004296710.1	1e-126	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7680	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-74	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]