PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G040508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB | ||||||||
Protein Properties | Length: 566aa MW: 62315.5 Da PI: 5.3478 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3.2e-18 | 47 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ede+l d+v+++G g+W+++ ++ g+ R++k+c++rw ++l HL.SW.v1.0.G040508.1 47 KGPWTSTEDEILMDYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 94 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.4e-15 | 100 | 143 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E+ l+++++ q+G++ W++ a+ ++ gRt++++k++w++ HL.SW.v1.0.G040508.1 100 KGAFSQDEERLIIKLHSQMGNK-WARMASQLP-GRTDNEIKNYWNT 143 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.015 | 42 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-24 | 45 | 97 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.87E-30 | 46 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 46 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 47 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.85E-11 | 49 | 94 | No hit | No description |
PROSITE profile | PS51294 | 24.414 | 95 | 149 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 98 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 99 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 100 | 143 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-10 | 102 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MVRWKKIKMS GSTNESEDGK ISKYHSDSPL IDDNNGGSSS GGLVLKKGPW TSTEDEILMD 60 YVNKHGEGNW NAVQKHSGLS RCGKSCRLRW ANHLRPNLKK GAFSQDEERL IIKLHSQMGN 120 KWARMASQLP GRTDNEIKNY WNTRIKRRQR AGLPLYPADL CLQACQENQG QSTGGINCGD 180 DGQNDPMQAN SFEIPDVVFK GLKANTDVLP YVSALPEMSM NSMLMKGIAS PQCYSFIPST 240 LNRHKRLRAT SDDFPDSSGC VQNGFPLFDQ CQVNCGKVVS PWSTFQHDLD PNKSLLSYDV 300 MQGSHALSNG NSSASKPIYG NVKLELPSLQ YTETDLGAWG TSPQPPLLES VDTYIHSPPT 360 VECSTPRNSG LLEDLLHESK NLGSGKKHLS EKSSNSSSIT PCDVVDNSPL NFCETEWEDY 420 RESPFCHSAT SLFNNECISN SGSSMEEPLP LNTFPGSTVK LEPFETDSVT TKERELSTQM 480 NIRPDALLGS EWFDQTTGYL DPTLVSDTIA TVLGDGLAND YNKHMASGTA SLGQEMMGFG 540 HCAWNAMPSD QQCLGNNYAF LNIER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-31 | 45 | 148 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM456085 | 2e-36 | AM456085.1 Vitis vinifera contig VV78X211164.14, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876153.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_015876154.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_015876155.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024927801.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024927802.1 | 0.0 | transcription factor MYB33 | ||||
TrEMBL | A0A2P5EMK2 | 0.0 | A0A2P5EMK2_TREOI; MYB transcription factor | ||||
STRING | XP_010091315.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-110 | myb domain protein 65 |