PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G040449.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 334aa MW: 37633.8 Da PI: 8.8908

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G040449.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	8.8e-11	15	56	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L HL.SW.v1.0.G040449.1 15 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 56 6889*************************9777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-6	12	75	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	14	58	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.2E-8	15	57	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.15E-22	16	67	No hit	No description
SuperFamily	SSF57959	4.56E-7	16	58	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.8E-8	17	60	No hit	No description
PROSITE pattern	PS00036	0	19	34	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-31	97	172	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
TRKGAGSTSE KPLDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRIKLT QLEQDLQRAR 60 AQGLFLGACG GASGNISPGA AIFDMEYGRW LEDDQRHMTE LRTGLQAHLP EGDLRMIIDG 120 YVSHYDEIFR LKAVAAKSDV FHLITGMWAT PAERCFLWMG GFRPSDLIKM LIAQLDPLTD 180 QQLMGIYSLQ QSSQQAEEAL SQGLEQLQQS LVDTIAGSPV LVDGMQQMAV ALGKLSNLEG 240 FVRQADNLRQ QTLHQLRRTL TVRQAARCFL VIGEYYGRLR ALSSLWASRP RESMVNDDTT 300 SCQTTTDLQM VHQQQHQHQH HQLHPQNHHF SSF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017016.1	0.0	LOW QUALITY PROTEIN: transcription factor TGA9
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2P5BUY5	0.0	A0A2P5BUY5_TREOI; Basic-leucine zipper transcription factor
STRING	XP_008383943.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-170	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]