PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040007.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 473aa    MW: 53745.6 Da    PI: 9.6243
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040007.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07376423448
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           WT  E  +lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
  HL.SW.v1.0.G040007.1 376 WTITEVTKLVDGISEYGVGRWTDIKRFLFttsAYRTPIDLRDKWRNLL 423
                           9*******************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-10367426IPR009057Homeodomain-like
PROSITE profilePS5129413.802368427IPR017930Myb domain
SMARTSM007172.5E-6372425IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-15374441IPR009057Homeodomain-like
CDDcd116602.66E-15374424No hitNo description
PfamPF139213.4E-5376440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDKEGHYRKK FPNMKSQRVK AEESFAPALE DETVEHLLAE PKIENVSVDG VLHFGEENAE  60
KCFGFDEFSR YEYFSDTYRG GLHSNTAQQG EDELEFGVLD GLLDEVEEIE DLHAADGLAS  120
PSEDFLLDIG FPGKVCGMDY GPPCWGSLTR NVSSASPSPG FSGSSNSPVG ISESSSVTIQ  180
ESECKNDSLN KPENHELPAL RYRRRREKPV SLEFRNPSLS DDDDDPLLSS MLINKHGRKS  240
GDASKIGASR REKRLRKPTQ RYIEEFSNKK SKHLKGQGKF SAAGMKNRQL KVKSPNELHL  300
VRSGTLSSVP EEEFPGETKI PVVPEVRARR GRPKKQISVL VTKPKEEVFT SDSDDDRVKK  360
RKRSEKHDRR KHQRMWTITE VTKLVDGISE YGVGRWTDIK RFLFTTSAYR TPIDLRDKWR  420
NLLRASSVQK LKKKEAEEKQ LHALRPLPKS LIRRVRELAK IHPYPRERGQ KS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207RRRREK
2358363KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028719.10.0uncharacterized protein LOC21407106
TrEMBLW9S5270.0W9S527_9ROSA; Telomere repeat-binding protein 4
STRINGXP_010107511.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-22TRF-like 6