PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039918.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 280aa    MW: 30859.1 Da    PI: 9.0442
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039918.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G039918.1 14 KGAWTKEEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                          79******************************99************97 PP
2Myb_DNA-binding53.36.4e-1767111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg++T+ Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  HL.SW.v1.0.G039918.1  67 RGNFTEIEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                           89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.586961IPR017930Myb domain
SuperFamilySSF466893.63E-2913108IPR009057Homeodomain-like
SMARTSM007174.9E-141363IPR001005SANT/Myb domain
PfamPF002493.8E-161461IPR001005SANT/Myb domain
CDDcd001672.52E-111661No hitNo description
PROSITE profilePS5129427.17862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2765117IPR009057Homeodomain-like
SMARTSM007179.1E-1766114IPR001005SANT/Myb domain
PfamPF002493.8E-1567111IPR001005SANT/Myb domain
CDDcd001675.66E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEIEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLISQG  120
LDPQTHRHLN ETAGDVAGAG PGAAALDFRN GSPPALPVAE INLMAEARRR KATVAPPNKS  180
VKEPITETVL EDTNYCTSSG TTTEDDQRPE KEKPVFVQDQ RPVLNLELSI GIGPFQSRDT  240
AQSKLVHIIP QHQLFNGALQ SPNTAAVAAA VVSQSHGTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841121.11e-119PREDICTED: transcription repressor MYB6-like
RefseqXP_018841122.11e-119PREDICTED: transcription repressor MYB6-like
SwissprotQ388512e-92MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A2P5CWF21e-140A0A2P5CWF2_PARAD; MYB transcription factor
TrEMBLA0A2P5EHK41e-135A0A2P5EHK4_TREOI; MYB transcription factor
STRINGXP_010104477.11e-117(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.19e-95myb domain protein 6