PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G039844.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Protein Properties

Length: 336aa MW: 37532.7 Da PI: 5.5796

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G039844.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	103.6	1e-32	85	191	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k ltpsdv+k++rlv+pk++ae++ gg+ ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+ HL.SW.v1.0.G039844.1 85 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggdssgGGE--KGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDV 171 99**************************999975444..6779**************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F+++ r++ +l+++++r+ HL.SW.v1.0.G039844.1 172 VLFERHCRDNDRLFIGWRRR 191 99998889****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.1E-41	74	201	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.27E-31	82	189	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.13E-28	83	176	No hit	No description
Pfam	PF02362	2.6E-29	85	191	IPR003340	B3 DNA binding domain
SMART	SM01019	5.0E-25	85	192	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.48	85	192	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010073	Biological Process	meristem maintenance
GO:0010358	Biological Process	leaf shaping
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDNSPLSSSP HNIPEFYHYQ TAPFSDIMSR TNNAASNPFN LNQYDDENDE HNDVVSDERY 60 HHPNQDDDND NNNDDEEIIM KEPMFEKPLT PSDVGKLNRL VIPKQHAEKY FPLGGGDSSG 120 GGEKGLLLSF EDESGKFWRF RYSYWNSSQS YVLTKGWSRY VKEKRLDAGD VVLFERHCRD 180 NDRLFIGWRR RAAAQDSAAV AAAHASNCGG GGGGGDSCIN NNNINNTGWT RMLYSAHPYP 240 THPHYHHHPA MPYHPDSIHA GISCSVPNQT TSSVNGNSKI LRLFGVNLEC HEQQSDEINE 300 NGLEPSTPDG SSLSSQGPPA QHQFYPPAHY SDHMI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-48	81	191	4	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-48	81	191	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018835309.1	2e-97	PREDICTED: B3 domain-containing protein At2g36080-like isoform X2
Swissprot	Q9FNI3	3e-66	Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBL	A0A2P5EBG7	1e-133	A0A2P5EBG7_TREOI; B3 DNA binding domain containing protein
STRING	VIT_08s0007g02810.t01	7e-98	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5739	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.1	2e-51	B3 family protein