PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039731.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 984aa    MW: 109422 Da    PI: 5.7576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039731.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-184792248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          g+WT+eEde+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
  HL.SW.v1.0.G039731.1 47 GKWTAEEDEILRRAVQHYKGKNWKKIAECFK-DRTDVQCLHRWQKVL 92
                          89****************************9.************986 PP
2Myb_DNA-binding57.53.2e-1898144148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+W++eEde +v++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
  HL.SW.v1.0.G039731.1  98 KGPWSKEEDEVIVELVNKYGAKKWSMIAEALP-GRIGKQCRERWHNHL 144
                           79******************************.*************97 PP
3Myb_DNA-binding42.91.1e-13150192145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           + +WT+eE++ l++a++ +G++ W+   + ++ gR ++ +k++w+
  HL.SW.v1.0.G039731.1 150 KEPWTQEEELTLIRAHQIFGNK-WAELTKFLP-GRADNAIKNHWN 192
                           679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1534192IPR017930Myb domain
SMARTSM007177.5E-164594IPR001005SANT/Myb domain
PfamPF002495.6E-164692IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2247104IPR009057Homeodomain-like
SuperFamilySSF466892.01E-1647102IPR009057Homeodomain-like
CDDcd001671.25E-144892No hitNo description
PROSITE profilePS5129431.5493148IPR017930Myb domain
SuperFamilySSF466893.71E-3195191IPR009057Homeodomain-like
SMARTSM007171.5E-1797146IPR001005SANT/Myb domain
CDDcd001672.62E-15100144No hitNo description
PfamPF139217.1E-17101159No hitNo description
Gene3DG3DSA:1.10.10.603.0E-27105152IPR009057Homeodomain-like
SMARTSM007172.7E-12149197IPR001005SANT/Myb domain
PROSITE profilePS5129417.674149199IPR017930Myb domain
CDDcd001672.54E-9152192No hitNo description
Gene3DG3DSA:1.10.10.602.1E-20153199IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MTRLRRTSVN RPGLPDASAP DEVSAACQKI KPLRGRTSGP TRRSTTGKWT AEEDEILRRA  60
VQHYKGKNWK KIAECFKDRT DVQCLHRWQK VLNPELIKGP WSKEEDEVIV ELVNKYGAKK  120
WSMIAEALPG RIGKQCRERW HNHLNPAINK EPWTQEEELT LIRAHQIFGN KWAELTKFLP  180
GRADNAIKNH WNSSVKKKLE TYLASGLLDQ FQGLPNVGNL NSTSSLGVQP NVNRAEDEDA  240
SECSQSSNGV NCTQFEPITE TGASSLRENY KTQESSCSME HDLEQYAMYG KAPPQFNKSC  300
FGSHKLARMS RLSAPEESLA QLGTSGLCIT SNENPAESTL LHDSVGFNSA DTVEDVLIDS  360
VKLERLLISE NDCSKTLFSE SRAPGCFPQD IEEKKSSSIG LDGGRSSSLC HFDIDNSFPA  420
RSSPLKSSVL VKDVSEPTME LDAIPSSRDD FICVDSPTGE AGKSDNYLKL DKGKNAPKLV  480
AVDIFSKGNS DSTETSFSVH ENKPHSKANS SQIVPSMDDN TIMQTEQQDS GTLLYDRPHF  540
PRLDIPFFNC DLMESNGDLQ HNYSPFGIRQ LLLPAASLSS PRCLLLDSPI RDSTPHAALK  600
RAKSLNSSST SMMRKRMYEM LSPIKERKGE IKFDRESNMR SSSFSCTFSS LESIFDENGA  660
CRMSISSIED SMQDETSVDY AFEERTKRVD KLDRRISEKN ESTTNSSDKL EQESTKVDAE  720
AKIDNTDTTF KQQPADVLIE HYLDSQLIIS PRYGQANRRL AVAVLSPKSR YSRKLDRSDQ  780
VSSLDLVIGK DEKCKVPVTS VECPSKAPEE ITSGAAGNDA DIQSIYMIGE SPGTQRDLES  840
PSAWKLLHSF LHGPGVDIDI PLQELDYAMS PGMRNYEAFG LMRQMNPGEV IASDQNHHEI  900
SSKTMTAIEP NLFGKDDYFI HDEKENLPPN VHLMDRRVLD FDECDGTPVK EMQSKKKFAA  960
GNSSSAGTSS SSSSSSHLLK SCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-66471998159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-66471998159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089227.10.0transcription factor MYB3R-1 isoform X2
TrEMBLA0A2P5FT150.0A0A2P5FT15_TREOI; Octamer-binding transcription factor
STRINGXP_010089227.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-114Homeodomain-like protein