PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 236aa    MW: 26684.6 Da    PI: 5.837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039350.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-1671121155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           + y+GVr++  +++Wv+e+r+p++   ++r++lg++ t e+Aa+a++ a+ +++g
  HL.SW.v1.0.G039350.1  71 PVYRGVRRRN-NNKWVCELREPKK---KTRIWLGTYPTSEMAARAHDVAAIAFRG 121
                           68*****887.8*********854...6***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1371121IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2172131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-3072131IPR001471AP2/ERF domain
SMARTSM003801.1E-2872135IPR001471AP2/ERF domain
PROSITE profilePS5103222.03672129IPR001471AP2/ERF domain
PRINTSPR003671.5E-77384IPR001471AP2/ERF domain
CDDcd000186.13E-2973131No hitNo description
PRINTSPR003671.5E-795111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDYFIQSSDT CSYVVESSNS DYNNYKQGCS SPFSSEEASR RASHSDEEVI LASNRPKKRA  60
GRRVFKETRH PVYRGVRRRN NNKWVCELRE PKKKTRIWLG TYPTSEMAAR AHDVAAIAFR  120
GKSACLNFAD SAWRLPRPVS LDAKDIRAAA TEGAEAFRPV EYGGVSGEKQ VDMEVDQSKE  180
KNNERVFFVD DDATLDMPGF FADLAEGLLL PPPYNYFGAD DVERNDDMSL WSYSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022626.19e-95LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 1E
SwissprotQ9FJ933e-67DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2P5BBT73e-99A0A2P5BBT7_TREOI; AP2/ERF domain containing protein
STRINGXP_010106004.12e-93(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-69C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]