PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G038933.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 377aa MW: 42024.3 Da PI: 5.3759

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G038933.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.4e-13	157	208	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ HL.SW.v1.0.G038933.1 157 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 208 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.60E-14	155	212	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.1E-14	156	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.326	156	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-17	156	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-10	157	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-10	162	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MALEAVVFPQ NPYFSYSANR ELYAMIGVGG NWVSYADDDE SNNNNSINIY DHQDQADAAP 60 SAASFDFLGN QTESSTCPYG DWNPSPSSSM VPHFNELHLS NSNPSPDAAN GNNNTATTTD 120 DFQPFDALTA FPQTTMTARP KRRRSRSRKN KEDIENQRMT HIAVERNRRK QMNEYLSVLR 180 SLMPDSYVQR GDQASIIGGA INFVKELEQQ VQFLGAQKES HDHQNSEDDH HHHQSGGQDD 240 SMPFSEFFTF PQYSTSSITH CENSAAAMAG ESPSSSVSRE RRSAIADIEV TMVESHASLK 300 IRSKKRSKQL LKMVSGLHTM RLTVLHLNVT TQDQIILYSV SVKVEDDCKL SSVDEIATAV 360 YQILARIQEE TLIMAN*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MALEAVVFPQ NPYFSYSANR ELYAMIGVGG NWVSYADDDE SNNNNSINIY DHQDQADAAP  60
SAASFDFLGN QTESSTCPYG DWNPSPSSSM VPHFNELHLS NSNPSPDAAN GNNNTATTTD  120
DFQPFDALTA FPQTTMTARP KRRRSRSRKN KEDIENQRMT HIAVERNRRK QMNEYLSVLR  180
SLMPDSYVQR GDQASIIGGA INFVKELEQQ VQFLGAQKES HDHQNSEDDH HHHQSGGQDD  240
SMPFSEFFTF PQYSTSSITH CENSAAAMAG ESPSSSVSRE RRSAIADIEV TMVESHASLK  300
IRSKKRSKQL LKMVSGLHTM RLTVLHLNVT TQDQIILYSV SVKVEDDCKL SSVDEIATAV  360
YQILARIQEE TLIMAN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	168	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106856.1	1e-141	transcription factor bHLH94
TrEMBL	A0A2P5C6B4	1e-175	A0A2P5C6B4_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010106856.1	1e-140	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF718	34	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	7e-75	bHLH family protein