PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G038215.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 159aa MW: 18154 Da PI: 6.2701

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G038215.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	8	26	37	55
-STCHHHHHHHHHHHHHHH CS HLH 37 KlsKaeiLekAveYIksLq 55 ++Ka++L A++Y+k+Lq HL.SW.v1.0.G038215.1 8 SMDKASVLGDAIKYMKQLQ 26 579***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-6	5	42	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-7	8	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MESNFSSSMD KASVLGDAIK YMKQLQERVK TLEEEMRKRN MESVVFVKKF QLFADKDNNS 60 SYSSDENCSS FDEPLPEIEA RVCDKNVLIR IHCEKKKGVM EKTIAEIEKH HLTIINSSCM 120 TFGSSSVDLT IIAQMNMEFS ITMKDLVKNL RLAFSLFM*

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107640.2	2e-80	transcription factor bHLH18
Swissprot	Q9T072	7e-42	BH025_ARATH; Transcription factor bHLH25
TrEMBL	A0A2P5ECZ5	5e-83	A0A2P5ECZ5_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010107640.1	5e-80	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF455	34	164

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-37	bHLH family protein