PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 666aa MW: 76990.1 Da PI: 8.3735

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G038203.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.2	1e-21	58	141	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ +eHnH l HL.SW.v1.0.G038203.1 58 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTHEHNHLL 141 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-18	58	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-29	261	354	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	547	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-5	558	585	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MDSSEKVVDP DCNEIPTDRD DLALTAELEG QNGVSEGRKE FVAPAIGMEF ESYEDAYNYY 60 NCYAKEVGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKET RTGCPAMIRM 120 RLVDSKRWRV LEVTHEHNHL LGSKVYKSIK KMGSGVKRNC QPSSDADVRT IKLYKALVID 180 SGGTGTSNSI ARETGMFPDH PNQLNLRKGD TQALYNYLCR MQLTNPNFFY LMDLNEEGRL 240 RNVFWIDARS RAACGYFSDT IYFDNTYLSN KFEIPLVAFV GINHHGQSVL LGCGLLAGET 300 TESYIWLFKA WLACTFGHSP QTIITDRCKT LSSVIAELFP RCHHRFSLSH IMKKVPEKLG 360 GLRNYDAIRK ALIKAVYESM KVIEFEAAWG FMIQRFGIGD HEWLRSLYED RVQWALVYLK 420 DTLFAGMAAA RPSEALNPFF DKYVHKQTPL KEFLDKYELA LQKRHKEEAL ADIESRSSNP 480 TLKTRCSFEL QLSKVYTREI FKKFQYEVEE MYSCFSTTQL HVDGPIVIFL VKERVMGEGN 540 RREIKDYEVL YNRTAGEVRC ICSCFNFYGY LCRHSLCVLN FNGVEEIPSK YILSRWKKDY 600 KRLHILDHGS NSVDVADRVQ WFNQMYKSAL QIVEEGVISL DHYKVALQAF EDSLKRVHEV 660 DVRHE*

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MDSSEKVVDP DCNEIPTDRD DLALTAELEG QNGVSEGRKE FVAPAIGMEF ESYEDAYNYY  60
NCYAKEVGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKET RTGCPAMIRM  120
RLVDSKRWRV LEVTHEHNHL LGSKVYKSIK KMGSGVKRNC QPSSDADVRT IKLYKALVID  180
SGGTGTSNSI ARETGMFPDH PNQLNLRKGD TQALYNYLCR MQLTNPNFFY LMDLNEEGRL  240
RNVFWIDARS RAACGYFSDT IYFDNTYLSN KFEIPLVAFV GINHHGQSVL LGCGLLAGET  300
TESYIWLFKA WLACTFGHSP QTIITDRCKT LSSVIAELFP RCHHRFSLSH IMKKVPEKLG  360
GLRNYDAIRK ALIKAVYESM KVIEFEAAWG FMIQRFGIGD HEWLRSLYED RVQWALVYLK  420
DTLFAGMAAA RPSEALNPFF DKYVHKQTPL KEFLDKYELA LQKRHKEEAL ADIESRSSNP  480
TLKTRCSFEL QLSKVYTREI FKKFQYEVEE MYSCFSTTQL HVDGPIVIFL VKERVMGEGN  540
RREIKDYEVL YNRTAGEVRC ICSCFNFYGY LCRHSLCVLN FNGVEEIPSK YILSRWKKDY  600
KRLHILDHGS NSVDVADRVQ WFNQMYKSAL QIVEEGVISL DHYKVALQAF EDSLKRVHEV  660
DVRHE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097195.2	0.0	uncharacterized protein LOC21408426
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	W9R3Q8	0.0	W9R3Q8_9ROSA; Protein FAR1-RELATED SEQUENCE 6
STRING	XP_010097195.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]