PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 758aa MW: 87546.9 Da PI: 4.7964

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G038202.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	1e-22	146	229	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + HL.SW.v1.0.G038202.1 146 NFYNCYAKEIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTVKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 229 6***************************************98887.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-20	146	229	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-27	353	446	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.78	639	675	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-5	650	677	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MTGDTAFSPN DPSLSSNADL HITIDEGSQN SENLLEEEGN DCEQLFEIDG DDHENGMDGK 60 SDHYFDIESN GHEDDGDDTN EHLFDIEGNG HENDVDEQLF DIEGNGHDDN KDDASIVDDG 120 SGTSQRKVYP PPVVGMEFES YDDAYNFYNC YAKEIGFAIR VKSSWTKRNS KEKRGAVLCC 180 NCEGFKTVKE ANSRRKETRT GCLAMIRLRL VESNRWRVDE VKLEHNHLFD PERAQNSKSH 240 KRMDAGAKRK VEPTLDVEVR TIKLYRAPAI DTVSYGSSNS NKGEINSQND RSSSLNLKLK 300 NGDVLLIQNF FCRAQLVDPN FFYVMDFNDE GLLRNVFWID SRSRGAYGHF NDVVLFDTTC 360 LSYNYEIPLI AFVGVNHHGQ NILLGCGLLA DETLDTYIWL FRAWLTCLSG RPPQTIITNQ 420 CKAMQNAIAE VFPRAHHRLC LANVAQSILE SLGALQEYEA FQIHFIRTVY DSLKVEEFEM 480 AWEDMIQRFG LRDQEWLRIL YDDRERWAPV YSKDIFFAGL SYFQKDESGS SIFDGYVHEK 540 TSLKDFFDVY DLFLEKKRQK EALDDFESRD LSPILKTRCY YELQLSQFYT KEVFRKFQDE 600 VVMMSSCYNI TQVHTNGSIA TYMVKDSEGK ELMRDVRNFE VVYDKTGAEV RCICSCFNFK 660 GYLCRHALCI LNYNGIEEIP FQYMLSRWRK EFKRLYVPDL GSNNVDITNP VQWFDHLYRR 720 AMQAVEEGVV SQDHYMVAWQ AFKESLNKVR LVADKHV*

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MTGDTAFSPN DPSLSSNADL HITIDEGSQN SENLLEEEGN DCEQLFEIDG DDHENGMDGK  60
SDHYFDIESN GHEDDGDDTN EHLFDIEGNG HENDVDEQLF DIEGNGHDDN KDDASIVDDG  120
SGTSQRKVYP PPVVGMEFES YDDAYNFYNC YAKEIGFAIR VKSSWTKRNS KEKRGAVLCC  180
NCEGFKTVKE ANSRRKETRT GCLAMIRLRL VESNRWRVDE VKLEHNHLFD PERAQNSKSH  240
KRMDAGAKRK VEPTLDVEVR TIKLYRAPAI DTVSYGSSNS NKGEINSQND RSSSLNLKLK  300
NGDVLLIQNF FCRAQLVDPN FFYVMDFNDE GLLRNVFWID SRSRGAYGHF NDVVLFDTTC  360
LSYNYEIPLI AFVGVNHHGQ NILLGCGLLA DETLDTYIWL FRAWLTCLSG RPPQTIITNQ  420
CKAMQNAIAE VFPRAHHRLC LANVAQSILE SLGALQEYEA FQIHFIRTVY DSLKVEEFEM  480
AWEDMIQRFG LRDQEWLRIL YDDRERWAPV YSKDIFFAGL SYFQKDESGS SIFDGYVHEK  540
TSLKDFFDVY DLFLEKKRQK EALDDFESRD LSPILKTRCY YELQLSQFYT KEVFRKFQDE  600
VVMMSSCYNI TQVHTNGSIA TYMVKDSEGK ELMRDVRNFE VVYDKTGAEV RCICSCFNFK  660
GYLCRHALCI LNYNGIEEIP FQYMLSRWRK EFKRLYVPDL GSNNVDITNP VQWFDHLYRR  720
AMQAVEEGVV SQDHYMVAWQ AFKESLNKVR LVADKHV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097192.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	W9RSB0	0.0	W9RSB0_9ROSA; Protein FAR1-RELATED SEQUENCE 8
STRING	XP_010097192.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]