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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G038119.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 154aa MW: 18239.7 Da PI: 9.669 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G038119.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 182.1 | 1.3e-56 | 17 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkat 86
+ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+ePwdL++ k+ +ee+ ewyfFs++dkky+tg+r+nrat +g+Wkat
HL.SW.v1.0.G038119.1 17 VPPGFRFHPTDEELVDYYLRKKITSRRVDL-DVIKDVDLYKIEPWDLQElcKIGSEEQsEWYFFSHKDKKYPTGTRTNRATVAGFWKAT 104
69***************************9.99**************954555554445****************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
g+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
HL.SW.v1.0.G038119.1 105 GRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 146
********.8899****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 154 aa
Download sequence Send
to blast |
MNFRSQRLAI MNAFSHVPPG FRFHPTDEEL VDYYLRKKIT SRRVDLDVIK DVDLYKIEPW 60 DLQELCKIGS EEQSEWYFFS HKDKKYPTGT RTNRATVAGF WKATGRDKAI YSKHDLIGMR 120 KTLVFYKGRA PNGQKSDWIM HEYRLETNEN GTPQ
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |