PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037060.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 334aa    MW: 37968.1 Da    PI: 8.5622
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037060.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15224317195
                           EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           f+ vlt+ d+++s+ + +p kfae++ +  +  sk+ltl+   + r+W  kl    +++r+ +++G  +F  +++LkegD++vF+++++
  HL.SW.v1.0.G037060.1 224 FLVVLTQYDMTSSC-VDVPLKFAEDNlN-GNLDSKDLTLQAhNEERKWPAKL--GYYRNRVKIGQGLGQFLASKDLKEGDVCVFEMIRD 308
                           66778777777777.***********73.3467899***996777*******..88888999***********************9998 PP

                           .SEE..EEE CS
                    B3  88 .sefelvvk 95 
                            +  e ++k
  HL.SW.v1.0.G037060.1 309 gEVDEILFK 317
                           787777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-82081IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-82081IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-16220321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-15220312IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-15222322No hitNo description
PROSITE profilePS5086310.433223324IPR003340B3 DNA binding domain
PfamPF023625.1E-13224316IPR003340B3 DNA binding domain
SMARTSM010198.9E-10224324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
METDQYSDRS PARPPTPPPP PPPLFIVTVD ENSNFLHMLR IPTMFGIKYG DQLSEEATLS  60
VPDDRKWKVK VKKEGGKFWL RDVRICSMGS EIDYPCHLDK HDKEKNDSNH DDDIQFLGVN  120
LHRYVKGQAE KTSIGRKDDQ VPRKRGRPRK EKKGTSSARA VAGPRSRASA ERKKQRESLD  180
KSQSHEEDDV QPKKRTVKHS KETEKAIGAA SAMITYELIK NPAFLVVLTQ YDMTSSCVDV  240
PLKFAEDNLN GNLDSKDLTL QAHNEERKWP AKLGYYRNRV KIGQGLGQFL ASKDLKEGDV  300
CVFEMIRDGE VDEILFKVWI YKAVADEVDL FVH*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-14B3 family protein