PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G036702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 497aa MW: 55466 Da PI: 6.3088 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.8 | 2e-40 | 12 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +p+G+rF+Pt+ee++++y+k k +g + ++ v+++vd + ++PwdLp +++k++++ w+fF++rd ky+++kr+nr+tk+gyWk tg HL.SW.v1.0.G036702.1 12 VPVGYRFSPTEEEVISHYMKLKNQGVNAMVDPVMATVDFCAFDPWDLPpkSMIKSSDQVWWFFCPRDYKYNNSKRSNRKTKTGYWKITG 100 599************************999889**************87448888999******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k ++++s+kg +g k++Lvfykg p g+ t+Wvmhey++ HL.SW.v1.0.G036702.1 101 KGQKIKSTKGVIIGGKRILVFYKGPCP-GQGTEWVMHEYHF 140 **********************88776.599********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-46 | 7 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.667 | 12 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-22 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MSSSAVVLPK NVPVGYRFSP TEEEVISHYM KLKNQGVNAM VDPVMATVDF CAFDPWDLPP 60 KSMIKSSDQV WWFFCPRDYK YNNSKRSNRK TKTGYWKITG KGQKIKSTKG VIIGGKRILV 120 FYKGPCPGQG TEWVMHEYHF EPENANPNQK SYVVCRLERK TDEKGPKTTS PDYETGQPSG 180 ESSPDGEYRL PSSAIPEYQL FCDTNNQVNL DSFFPHRNAQ NAHDFLNEIQ VSFSGDEAVD 240 VDFADSLIVE PEECHYGATT KRYSLDGADS SETDDEWIRQ AVGSHDNSKR VRHLQMNRTP 300 SETFHTYSGG NVVEETIVSG QFSEEDTSSD DFTPGGGIKI KPLDLGSVGI RQFTTGRNNV 360 IHFNEGDVPI RGGVHHTRVQ PPKKVSIVAV PGNKVPEAGK HSITHICSPK KEKSTEESEN 420 LRKTAHCSSS VERHFELQAE CESTVSSKLK SFFTFEETSS VLSCDTTPPS VYVLNTVVGV 480 VLFLVFLREL VLFGSW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-31 | 11 | 163 | 14 | 171 | Stress-induced transcription factor NAC1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5FHB7 | 1e-130 | A0A2P5FHB7_TREOI; NAC domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 2e-45 | NAC 014 |