PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G036341.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 197aa MW: 21612.2 Da PI: 9.5434

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G036341.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	113	151	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq HL.SW.v1.0.G036341.1 113 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 151 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.331	101	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.75E-6	111	155	No hit	No description
SuperFamily	SSF47459	1.31E-10	111	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-8	115	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MKNNLLYSHP GREEECLQAI NRSNNISSTV WSPPQALAMP VVSSPIMSCV TTTTSLGSNN 60 MLDFSYYNNK PVESGNQNTD QSSEGHSTDT RGAVSNKKAR VQPSPSQPPL KVRKEKLGDR 120 ITALHQLVSP FGKTDTASVL LEAIGYIRFL QSQIEALSSP YLGNASKNMR NYNQQYVSTH 180 FPISQFKLSY NSPPSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228480.1	5e-57	PREDICTED: transcription factor bHLH68-like isoform X1
Refseq	XP_008228481.1	5e-57	PREDICTED: transcription factor bHLH68-like isoform X2
Refseq	XP_008228482.1	3e-57	PREDICTED: transcription factor bHLH68-like isoform X3
Refseq	XP_016649113.1	3e-57	PREDICTED: transcription factor bHLH68-like isoform X4
Refseq	XP_021829118.1	3e-57	transcription factor bHLH68-like isoform X2
Swissprot	Q8S3D1	4e-35	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2P5BDQ0	3e-74	A0A2P5BDQ0_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRING	XP_008228480.1	2e-56	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-37	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]