PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 333aa MW: 36511.2 Da PI: 6.2469

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G036285.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.9	5.7e-16	47	96	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq HL.SW.v1.0.G036285.1 47 RSKHSVTEQRRRSKINERFQILRDLVPHS----DQKRDTASFLLEVIEYVQYLQ 96 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-18	43	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-22	44	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.139	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.88E-14	47	100	No hit	No description
Pfam	PF00010	2.4E-13	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-12	51	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MRTPAKGHHE EEEFEDDEYG SKKEGPSSNN NSNSKDAKNN DKASAIRSKH SVTEQRRRSK 60 INERFQILRD LVPHSDQKRD TASFLLEVIE YVQYLQEKVH KFEGSYQGWS SEPTKLIPWR 120 NSHWRVQNFV GHPPQTIKNG PGAAFSGKFD ENNMSISPTM LTSPQNLVDS DPSRDVACKT 180 LDRQPEAANK GVPLPIPTLA SMSACTSDGM LTQPLQIPVS ESQSTQCPTT SDGPNQQEEF 240 MVEGGTISVT SAYSQGLLNT LAQVLQNAGL DLSQASISVQ IDLGKRANRV LSAGTSSSKD 300 YENAPSSNQT IAHHRDAGVG EDSDQAQKRL KT*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018285.1	1e-179	transcription factor BIM2
Swissprot	Q9CAA4	1e-113	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A2P5DTX4	0.0	A0A2P5DTX4_TREOI; Basic helix-loop-helix transcription factor
STRING	EMJ23764	1e-172	(Prunus persica)
STRING	XP_010091635.1	1e-171	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-100	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]