PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G036253.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

LBD

Protein Properties

Length: 235aa MW: 25387.4 Da PI: 8.4985

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G036253.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.3	2e-27	19	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk +lpe++r da++slvyeA+ r+rdPvyG++g+i++lqqq+++ HL.SW.v1.0.G036253.1 19 PCAACKLLRRRCAEECPFSPYFSPQEPQKFAAVHK------------ELPESQRADAANSLVYEANLRLRDPVYGCMGLISALQQQIQT 95 7******************************96............99************************************ PP DUF260 90 lkaelallkee 100 l+ael+++++e HL.SW.v1.0.G036253.1 96 LQAELNAVRTE 106 ****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.472	18	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-26	19	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGRRVQSFGP PGTLNTITPC AACKLLRRRC AEECPFSPYF SPQEPQKFAA VHKELPESQR 60 ADAANSLVYE ANLRLRDPVY GCMGLISALQ QQIQTLQAEL NAVRTEILRY KFREATTNSH 120 NHHIVSSTNT STSTTTTHQA ALANLMSPHH HHNHNNIHQA VVSIASLPSQ LAISHSTLSP 180 GPPHRLPPPS PPPPPPSIVV SASSTTSSST SSLYTSTNTT GYSSISSDNV PYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-36	11	114	3	118	LOB family transfactor Ramosa2.1
5ly0_B	5e-36	11	114	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874603.1	1e-74	LOB domain-containing protein 13
Swissprot	Q9AT61	3e-59	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2P5CYR2	1e-91	A0A2P5CYR2_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_008244000.1	7e-71	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-60	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]