PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G036129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | FAR1 | ||||||||
Protein Properties | Length: 680aa MW: 77887.8 Da PI: 7.8385 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68 | 2.4e-21 | 62 | 155 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a ++++k + +w+vt + ++H HL.SW.v1.0.G036129.1 62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKASNESKPQRNRKSSRCGCQAYMRISKATelgGPEWRVTGFANHH 150 6**************9998877356667999*****************999********************9988788*********** PP FAR1 86 nHela 90 nHel HL.SW.v1.0.G036129.1 151 NHELL 155 ***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.8E-18 | 62 | 155 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-17 | 278 | 369 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.617 | 556 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.5E-5 | 560 | 587 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0056 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MSDEAGEMLV VYDDPSDHRS LSLDDTSSTA ESLDETRLSL ETTNDTIPYI GQRFSTHDAA 60 YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE SKPQRNRKSS 120 RCGCQAYMRI SKATELGGPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKSRILMF 180 AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDPEEESID LLRMCRNIKE 240 KDPNFKFEYT LDSNNRLENI AWSYASSIQA YDIFGDAVVF DTSHRLTVFD MPLGIWVGMN 300 NYGMPCFFGC VLLREESLRS FSWALKVFLG FMSGKAPQTI LTDQNMCLKE AISMELPTTK 360 HALCIWMIVA KFPSWFNAVL GERYNEWKGE FYRLYNLESI EDFELGWREM VNSFGLHSNR 420 HIINLYGLRS LWALPFLRSH FFAGLTTIGQ SKSINAFIQR FLGAQTRLAH FVEQAAAAVD 480 FKDQAGEQQT MQQNLQNICL KTGAPMESHA ASILTPYAFS KLQEQLVLAA HYASFQMEDG 540 FLVRHHTKAE GGRKVYWVPR EGIISCRCHH FEFSGILCRH SLRVLSTGNC FQIPDRYLPD 600 RWRRISTPSL KLLQNAPSDH GEKIQVLQSL VSTLVTESTK SKERLDMATE QVSILLSQVR 660 EQPVSLQTTR EIPSFHRNI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023562.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_024023563.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A251RL31 | 0.0 | A0A251RL31_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5XX99 | 0.0 | M5XX99_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26358 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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