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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G036102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 25361.1 Da PI: 4.6194 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 34 | 89 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwq 45 +WT+eEd +lv++++ +G g W++Ia+ ++ gRt++q+k++w+ HL.SW.v1.0.G036102.1 34 SWTEEEDSILVNYINTHGEGrwnflafdsdsimhGWSKIAEWLP-GRTDNQIKNYWR 89 7*******************************************.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.75 | 27 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-11 | 31 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-17 | 31 | 97 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.9E-12 | 32 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.43E-12 | 34 | 89 | No hit | No description |
Pfam | PF00249 | 1.4E-12 | 34 | 90 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MENTSKEVRR GGSATHDEDD YCREEMSGIR NGRSWTEEED SILVNYINTH GEGRWNFLAF 60 DSDSIMHGWS KIAEWLPGRT DNQIKNYWRS RVQKQAKLLK CEVNSQQFRD IMRNVLIPRL 120 AKQIQLTQTT TPQSPDPTIT RDIDPTTPLT MPAAAFASAS ASLNDAVLVQ PNHYYDDPAS 180 LMLEWPLLQQ NDHVATTSTT ADPFGDYLTY DDIANILWNH DI* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024189443.1 | 9e-33 | transcription factor MYB108 | ||||
STRING | XP_010094412.1 | 6e-32 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 6e-31 | myb domain protein 2 |