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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G035953.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 27465.9 Da PI: 4.165 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 5 | 47 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+++Ed l++a+k+lG++ W+ Ia+++ gR+++ +k++w+ HL.SW.v1.0.G035953.1 5 KDTWSEDEDIVLIEAHKELGNR-WAEIAKRLD-GRSENTIKNHWN 47 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.276 | 1 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.3E-14 | 3 | 55 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-17 | 3 | 52 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 4 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 5 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.45E-12 | 7 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MCLSKDTWSE DEDIVLIEAH KELGNRWAEI AKRLDGRSEN TIKNHWNATK RRQSSKKKSR 60 DPNNKGSTLL QDYIRSLEPS DENSTTSTPE NNNNNGVAVV VGERPEFYPE DHEEIEHYEH 120 ENYDPDNYGY ESNAAVVLMA AASADQSSDM SEDSTDEAWT DNFYNVDLGA MDANATNDKN 180 LYSESYGFRS LLEEMSYGSV IMNDENGVDF QMRSEIESLM RGPGEAVKKE MDLMEMLCLG 240 KL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1idy_A | 5e-17 | 1 | 53 | 1 | 53 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
1idz_A | 5e-17 | 1 | 53 | 1 | 53 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108794.1 | 2e-58 | transcription factor MYB115 | ||||
TrEMBL | A0A2P5BUN7 | 7e-80 | A0A2P5BUN7_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_010108794.1 | 6e-58 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-22 | myb domain protein 98 |