PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035642.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 391aa    MW: 43187.7 Da    PI: 4.6016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035642.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1980130155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           + y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+++++g
  HL.SW.v1.0.G035642.1  80 CNYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGTFPTALEAALAYDEAARAMYG 130
                           56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1480130IPR001471AP2/ERF domain
CDDcd000182.26E-3180139No hitNo description
SuperFamilySSF541712.22E-2081138IPR016177DNA-binding domain
PROSITE profilePS5103221.60181138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3081139IPR001471AP2/ERF domain
SMARTSM003801.6E-3481144IPR001471AP2/ERF domain
PRINTSPR003672.4E-98293IPR001471AP2/ERF domain
PRINTSPR003672.4E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGVFDQGFNM KSLPFNSPRK RKTRSRREGT SVADTLAKWK EYNNSIESTN DNGKPTRRVP  60
AKGSKKGCMK GKGGPDNSRC NYRGVRQRTW GKWVAEIREP NRGRRLWLGT FPTALEAALA  120
YDEAARAMYG PCARLNLPNI TDYRSFELSS KDSSSLATPS GSSSVTTPAG SDSTTTSNSI  180
LSEVCADEES KVKGIASGGK NEVIEGESKI YPRPLPVAEV APPLSSVKSE VKAEEASPQP  240
QYVKEETKEE PMEEEYQTWD KLGDTGENFL QSFSMDEMFD VEELLGIMDT NAGSMEDVCY  300
NASQWDDEEF QSDKPSNLSY QLANPDAKLL GSLCHMEHAS SGLDYSFDFL KPGRLEDNNI  360
CIDDQAYTWD YPITSFEMEG KSGCRNNGAD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1681138260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027RKTRSRRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087025.21e-146dehydration-responsive element-binding protein 2C isoform X2
TrEMBLA0A2P5ECK41e-175A0A2P5ECK4_TREOI; AP2/ERF transcription factor
STRINGXP_010087025.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-46ERF family protein