 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G035408.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
NAC |
| Protein Properties |
Length: 194aa MW: 21987 Da PI: 10.3928 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G035408.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 162.1 | 2.1e-50 | 25 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrF P+d+el+v+yL++kv++k+l++ ++i+++d+yk++Pw+Lpkk++ +e+ewyfFs+rd+ky++g+r+nra+ gyWkatg d
HL.SW.v1.0.G035408.1 25 LPPGFRFYPSDQELIVHYLQNKVASKPLPA-SFIADIDLYKYNPWELPKKAAFGEEEWYFFSPRDRKYPKGDRPNRAAGLGYWKATGID 112
79****************************.89***************999999*********************************** PP
NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
k+++s+ ++++g+kk Lvfy gr pkgektdW+m+eyrl
HL.SW.v1.0.G035408.1 113 KPIFSSygLSKKIGVKKGLVFYAGRPPKGEKTDWFMNEYRL 153
*****9877788***************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 194 aa
Download sequence Send
to blast |
MEREPSSSSS GSGSTTNTTT SNPRLPPGFR FYPSDQELIV HYLQNKVASK PLPASFIADI 60
DLYKYNPWEL PKKAAFGEEE WYFFSPRDRK YPKGDRPNRA AGLGYWKATG IDKPIFSSYG 120
LSKKIGVKKG LVFYAGRPPK GEKTDWFMNE YRLLDSSPIN KSPRFKGSMR VSEQKNRVLK 180
IVPVSYRETK QSV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-58 | 25 | 165 | 17 | 154 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-58 | 25 | 165 | 17 | 154 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-58 | 25 | 165 | 17 | 154 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-58 | 25 | 165 | 17 | 154 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-58 | 25 | 165 | 20 | 157 | NAC domain-containing protein 19 |
| 3swm_B | 5e-58 | 25 | 165 | 20 | 157 | NAC domain-containing protein 19 |
| 3swm_C | 5e-58 | 25 | 165 | 20 | 157 | NAC domain-containing protein 19 |
| 3swm_D | 5e-58 | 25 | 165 | 20 | 157 | NAC domain-containing protein 19 |
| 3swp_A | 5e-58 | 25 | 165 | 20 | 157 | NAC domain-containing protein 19 |
| 3swp_B | 5e-58 | 25 | 165 | 20 | 157 | NAC domain-containing protein 19 |
| 3swp_C | 5e-58 | 25 | 165 | 20 | 157 | NAC domain-containing protein 19 |
| 3swp_D | 5e-58 | 25 | 165 | 20 | 157 | NAC domain-containing protein 19 |
| 4dul_A | 4e-58 | 25 | 165 | 17 | 154 | NAC domain-containing protein 19 |
| 4dul_B | 4e-58 | 25 | 165 | 17 | 154 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
