PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035184.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family AP2
Protein Properties Length: 447aa    MW: 49122.2 Da    PI: 6.7249
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035184.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-12337393155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  HL.SW.v1.0.G035184.1 337 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 393
                           78*******************77776664346655.77******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-9337393IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-14337403IPR016177DNA-binding domain
CDDcd000181.73E-19337401No hitNo description
SMARTSM003801.0E-20338407IPR001471AP2/ERF domain
PROSITE profilePS5103217.253338401IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-12338402IPR001471AP2/ERF domain
PRINTSPR003673.9E-5339350IPR001471AP2/ERF domain
PRINTSPR003673.9E-5383403IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MKAMDDHNSN DNNNNNSGNH TDNWLGFSVS PQMKREFTSS STTPIAVSNS VPTSYYLPPS  60
QFNCSGLCYG VGENAAFQSP LSVMPLKSDG SLCIMEALSR SQPEGMMPSS SPKLEDFLGG  120
ASMGSHEYGS QERQAMALSL DNIYYSQNVE SSDTNRDPHH HSLDLLQQSY RQQNHQIPYF  180
SEIHCHGVYQ TTQLGEQESK QIHIPDCTTT TTDSHITQMP PEDHHSGMPC LKNWVVARQY  240
AGQHSIDHAV NLVDADSGGG GGGATGSVGA LSCGELQSLT LSMSPGSQSS CITAPRQISQ  300
TGTECMVMET KKRGPGKVGQ KQTVHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC  360
KKEGQTRKGR QGGYDMEEKA ARAYDLAALK YWGASTHINF PLENYQTELE EMKKTTRQEK  420
SSGFSRGASM YRGITNMEDG KLGLAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810432.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2P5CWY20.0A0A2P5CWY2_PARAD; AP2/ERF transcription factor
STRINGcassava4.1_002957m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-71AP2 family protein