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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G035065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 174aa MW: 20054.2 Da PI: 6.2644 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.3 | 2.1e-42 | 19 | 152 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 pG+rF Pt+eel+++yL++k+eg++ +l++ vi+ +diy+++PwdLp+ ++++ ++++fF++r++++a+g r++r t++gy HL.SW.v1.0.G035065.1 19 IPGYRFYPTEEELISFYLHNKLEGQREDLNRlinrVIPLLDIYEFNPWDLPQysgvPCQGDPEQCFFFIPRQESEARGGRPSRLTETGY 107 59************************55433333379999***********64655444566799************************ PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 Wkatg+ v+s++++ +glk+t+vfy+grap+g+kt+W m+ey+ HL.SW.v1.0.G035065.1 108 WKATGSPSYVYSSRNRIIGLKRTMVFYNGRAPHGTKTQWKMNEYK 152 ********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-43 | 16 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.22 | 18 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-21 | 20 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MENNNDNHNN NNNNDNSTIP GYRFYPTEEE LISFYLHNKL EGQREDLNRL INRVIPLLDI 60 YEFNPWDLPQ YSGVPCQGDP EQCFFFIPRQ ESEARGGRPS RLTETGYWKA TGSPSYVYSS 120 RNRIIGLKRT MVFYNGRAPH GTKTQWKMNE YKAIAIQGEP TITSSTTATP DPPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-31 | 20 | 152 | 17 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008243510.1 | 6e-83 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-60 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2P5EBH1 | 5e-95 | A0A2P5EBH1_TREOI; NAC domain containing protein | ||||
STRING | XP_008243510.1 | 2e-82 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-62 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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