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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G035058.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
NAC |
| Protein Properties |
Length: 213aa MW: 24882.1 Da PI: 4.5996 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G035058.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 88.9 | 9e-28 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrF Ptdeel+ ++L +kv + + ++i+++d++ ++Pw++ ++ ++ + yfFsk+ + +at++gyWk+ +
HL.SW.v1.0.G035058.1 9 LPPGFRFCPTDEELILQFLYPKVFLIPSTHLNIIPDLDLHLYHPWEFTGTALSSGNMHYFFSKKTE--------DKATSNGYWKEMDIN 89
79***********************99888899**************9665566788899998766........457999********* PP
NAM 90 kevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
++++++ ++++vg+kk v++ +++ ++++t+W+m+ey+l
HL.SW.v1.0.G035058.1 90 EPIFVSgDHNKVGVKKYYVYFvinhHESPTSATETNWIMEEYNL 133
****9977888*********9887656777889*********87 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MGDNQGVKLP PGFRFCPTDE ELILQFLYPK VFLIPSTHLN IIPDLDLHLY HPWEFTGTAL 60
SSGNMHYFFS KKTEDKATSN GYWKEMDINE PIFVSGDHNK VGVKKYYVYF VINHHESPTS 120
ATETNWIMEE YNLCNNLEWM STTSPTYKRR RKLKLDFKWV LCRVHERKLD DISLQCIQYE 180
DDDNGTELSC LDEMFLSSLD DDLDEVSMQI LD*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-22 | 7 | 168 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-22 | 7 | 168 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-22 | 7 | 168 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-22 | 7 | 168 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 6e-22 | 7 | 168 | 18 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 6e-22 | 7 | 168 | 18 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 6e-22 | 7 | 168 | 18 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 6e-22 | 7 | 168 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 6e-22 | 7 | 168 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 6e-22 | 7 | 168 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 6e-22 | 7 | 168 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 6e-22 | 7 | 168 | 18 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 6e-22 | 7 | 168 | 15 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 6e-22 | 7 | 168 | 15 | 166 | NAC domain-containing protein 19 |
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