PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034789.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 308aa    MW: 34307.7 Da    PI: 6.8293
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034789.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08167207954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  HL.SW.v1.0.G034789.1 167 ARHRRERISERIRILQRLVPGG-----TKMDTATMLDEAIRYVKFL 207
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.875158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-14164218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-13164227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-6168207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-5181212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDMNNHTAAY NDNKLFTSNN SSSAAYWDLQ TAAMEHHHHN ILSSQHHNHQ IPTTISGHHH  60
HHSTSSLWPN FTHLQHQSPS LASPSSLLNM TTDHNKYHHP HVAVEDNQDQ ANDEHGYDDQ  120
EEEELGAMKE MMYKIAAMQP VDIDPATIRK PKRRNVRISD DPQSVAARHR RERISERIRI  180
LQRLVPGGTK MDTATMLDEA IRYVKFLKRQ IRLLQANDHI DPQQQGLVQI SSTSTTANTN  240
STTATQPLAS ANNWGTAAQG QYGSATTAPD PPSFGVFGRG GGSGTLLGET LFYNTGFNHH  300
HDQVISE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077794.13e-65transcription factor HEC3-like
TrEMBLA0A2P5DGU32e-79A0A2P5DGU3_PARAD; Basic helix-loop-helix transcription factor
STRINGAET047283e-60(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.13e-41bHLH family protein