PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

ERF

Protein Properties

Length: 193aa MW: 20732.8 Da PI: 8.3167

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G034522.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.4e-17	33	82	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAeIr+p +kr r++lg++ ta Aa+a++ a +l+g HL.SW.v1.0.G034522.1 33 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 82 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.2E-30	32	91	IPR001471	AP2/ERF domain
SMART	SM00380	4.2E-38	33	96	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.3	33	90	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-10	33	82	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	33	91	IPR016177	DNA-binding domain
CDD	cd00018	1.46E-25	33	92	No hit	No description
PRINTS	PR00367	3.0E-11	34	45	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-11	72	92	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
METAGPPPRE TTRKRAGGGG GGGGGVGGGG ERQYKGIRMR KWGKWVAEIR EPNKRSRIWL 60 GSYSTAVAAA RAYDTAVFYL RGPSARLNFP ELAQEGGGCG CAADMSAASI RKMATEVGAR 120 VDAHQAAIRH HHHHHLHNHH HLHNHHHSQS DSGEGAAEEL KPGTGFLNGV DLNKMPEPEN 180 SDGELEWDRN SD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-15	24	99	4	81	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00595	DAP	Transfer from AT5G67190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889855.1	3e-69	ethylene-responsive transcription factor RAP2-10
Refseq	XP_028764099.1	7e-69	ethylene-responsive transcription factor ERF011-like
Swissprot	Q9FH94	2e-55	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	A0A2P5D1L6	2e-81	A0A2P5D1L6_TREOI; AP2/ERF domain containing protein
STRING	XP_010093506.1	2e-66	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1290	32	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50260.1	8e-41	cooperatively regulated by ethylene and jasmonate 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]