PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034382.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 285aa    MW: 32666.9 Da    PI: 6.7938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034382.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.72.6e-5491341128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+d
  HL.SW.v1.0.G034382.1   9 LPPGFRFHPTDEELIVYYLENQATSRPCPV-SIIPEVDIYKFDPWELPDKAEFGENEWYFFSPRDRKYPNGVRPNRATISGYWKATGTD 96 
                           79****************************.89***************99999************************************ PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++s +++ vg+kk Lvfykg+ pkg ktdW+mheyrl
  HL.SW.v1.0.G034382.1  97 KAIYS-GSKYVGVKKALVFYKGKPPKGIKTDWIMHEYRL 134
                           *****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-665161IPR003441NAC domain
PROSITE profilePS5100561.4759161IPR003441NAC domain
PfamPF023657.7E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEAKTGSGLP PGFRFHPTDE ELIVYYLENQ ATSRPCPVSI IPEVDIYKFD PWELPDKAEF  60
GENEWYFFSP RDRKYPNGVR PNRATISGYW KATGTDKAIY SGSKYVGVKK ALVFYKGKPP  120
KGIKTDWIMH EYRLTDSRRQ ITKHVGSMRL DDWVLCRIYK KRNVNKALEP KVEDLSPHID  180
ITTVANEATT EDHEKLKFPR TYSLAQLLDL DYLGPISQLL SDNPYNSAHD FLLNNTLTNS  240
GTGFVQKFEF GDEMPYQNVD PGRFQVAQTS TSFTPGYDMY CLDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-70916317167NO APICAL MERISTEM PROTEIN
1ut4_B3e-70916317167NO APICAL MERISTEM PROTEIN
1ut7_A3e-70916317167NO APICAL MERISTEM PROTEIN
1ut7_B3e-70916317167NO APICAL MERISTEM PROTEIN
4dul_A3e-70916317167NAC domain-containing protein 19
4dul_B3e-70916317167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108694.11e-164NAC transcription factor 29 isoform X1
SwissprotK4BNG71e-122NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A2P5G0D61e-171A0A2P5G0D6_TREOI; NAC domain containing protein
STRINGXP_010108694.11e-163(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-116NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]