PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G034009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 570aa MW: 62845.5 Da PI: 4.6645 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.1 | 2.6e-30 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +p+G+ F+Ptd+e++++yL+ k+ g + e++ +i+ev+i++++Pw+Lp k k+k++++ew+f s++ ++++++rk r+t++g Wk tg HL.SW.v1.0.G034009.1 8 VPVGLTFSPTDQEVIDYYLRLKLLGMDSEVDPCIAEVNILDFDPWELPaKsKLKSNNNEWWFSSRSFYRTSSSDRKGRKTETGSWKITG 96 589***************************888**************95357788888***99999999999***************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k k++ s vg k L+fy kg ktdW+m+ey++ HL.SW.v1.0.G034009.1 97 KRKKIGS-----VGEKAYLTFY-----KGGKTDWTMQEYSI 127 *****98.....9*********.....6889********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-32 | 6 | 146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.985 | 8 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-16 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MSSNPSVVPV GLTFSPTDQE VIDYYLRLKL LGMDSEVDPC IAEVNILDFD PWELPAKSKL 60 KSNNNEWWFS SRSFYRTSSS DRKGRKTETG SWKITGKRKK IGSVGEKAYL TFYKGGKTDW 120 TMQEYSIPVH NNHLHQKYTN VICCLRLKTD NKGRKANKQK SARVISHSKK KGRKANATCW 180 EEGETSGDNI TPDLENPVAS AVTTLVHGHD EVNHQQFSPM LLPGSTFIEH ALSLMLDYEM 240 LVASGENGEV SGKTTSDLVL ENPSASTDIS PLVQCDDEVS CQLSSQIYSP DFSEQMLSSL 300 LDNAIQAPSG IDGELSGQIF SDFAHMLGNE KLVPSGENGA ISGQTSSDIE NQLAHAVTSP 360 LLHCPDEASS QLFSPDSSFK GKTLSFISDN DMHVPSGAYG ELRGISTSDL ENPLASAVVS 420 SSLQCDDDAS CQLVSHIYSP DSSKQMLSSL LDYKIQAPSG TDGELSGQSS SDFDNQVAFV 480 AHCDDEMNHH LSWPMYSPDV SNEYYVKFAD PFVDDREEND NRTTTGLFST YRTSSKRPYV 540 YFDGQFMGEA HTEEVNERAK RCVYWPLDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-18 | 8 | 127 | 15 | 140 | Stress-induced transcription factor NAC1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18500 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02230.1 | 3e-24 | NAC domain containing protein 4 |