PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033901.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 377aa    MW: 40773.7 Da    PI: 7.3586
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033901.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30192250259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+
  HL.SW.v1.0.G033901.1 192 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRTDPGMFIVTYTAEHNHP 250
                           79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30182252IPR003657WRKY domain
PROSITE profilePS5081134.808186252IPR003657WRKY domain
SuperFamilySSF1182907.19E-26189252IPR003657WRKY domain
SMARTSM007742.6E-36191251IPR003657WRKY domain
PfamPF031062.5E-25193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEVDWDLQAV VRGCSTAGAG VRASTTTTAT STTTSPVFMA DFQTTAASSS SFLFSSSSSP  60
SPFGSTSCNS SSISEHQSSG QLFLLPDPNS MRPRNFVVEE LHELYKPFFP KSHAQIQTPL  120
SSLSSICSST STSTTIRSND QIRQVKQHQH QHQHQPTTKQ SHNNGSTTTP RSKKRKNQLK  180
KVCQVPAESL SSDIWAWRKY GQKPIKGSPY PRGYYRCSSS KGCLARKQVE RNRTDPGMFI  240
VTYTAEHNHP APTHRNSLAG STRQKPSTPQ SISGTSDFNN PATKTSSPAT SGEEEVFVPQ  300
THSTTTESKD GPESVLMDDD DEDEFGLSDV AMSDDFFVGL EGLGSPTTGE FFSDNFPTSF  360
SLPWVANSAA TAAGGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-23176253280Disease resistance protein RRS1
5w3x_D5e-23176253280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092573.11e-150WRKY transcription factor 22
TrEMBLA0A2P5F0361e-169A0A2P5F036_TREOI; WRKY domain containing protein
STRINGXP_010092573.11e-150(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-79WRKY family protein