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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G033762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bZIP | ||||||||
Protein Properties | Length: 173aa MW: 19682.9 Da PI: 10.3661 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.8 | 3.1e-10 | 85 | 126 | 10 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 NR +A rs +RK +i+eL++kv++L++e ++L +l HL.SW.v1.0.G033762.1 85 ILANRQSAARSKERKARYIQELKQKVQTLQTEATTLSAQLTL 126 567*********************************988866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.4E-6 | 76 | 140 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 5.33E-18 | 82 | 128 | No hit | No description |
SuperFamily | SSF57959 | 3.81E-10 | 83 | 130 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-10 | 83 | 134 | No hit | No description |
Pfam | PF00170 | 3.0E-8 | 84 | 126 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MLPFMEDEVR LGGGWKQNWA RGLHYLRSGR RGLGSLSCVQ WWYYVAVLLT VLTSSQGLLK 60 IQWLEKSVLP SPCSLNTRGT LLQRILANRQ SAARSKERKA RYIQELKQKV QTLQTEATTL 120 SAQLTLFEGI LTSLFQSNGK YMYDYATISF LAEVFKLLVS SLLLWRECRA SL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6i1r_A | 1e-13 | 124 | 171 | 13 | 60 | CMP-sialic acid transporter 1 |
6i1r_B | 1e-13 | 124 | 171 | 13 | 60 | CMP-sialic acid transporter 1 |
6i1z_A | 1e-13 | 124 | 171 | 13 | 60 | CMP-sialic acid transporter 1 |
6i1z_B | 1e-13 | 124 | 171 | 13 | 60 | CMP-sialic acid transporter 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229678 | 1e-34 | KP229678.1 UNVERIFIED: Boehmeria nivea Basic leucine zipper transcription factor-like (bZIP12) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022944406.1 | 5e-19 | transcription factor RF2b-like | ||||
Refseq | XP_022986886.1 | 4e-19 | transcription factor RF2b-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.2 | 2e-21 | basic leucine-zipper 52 |