PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033561.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 371aa    MW: 41647.6 Da    PI: 6.7936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033561.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12195241455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++YIk+Lq
  HL.SW.v1.0.G033561.1 195 DHVMAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYIKNLQ 241
                           699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-17195252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-10195241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-17196254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.68E-13196245No hitNo description
SMARTSM003536.7E-15197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEISSAKWMS ELELEDPANI FEQYQVDYSF DDLNFQSFSS ESYSSYPNFV PENPQNLSSN  60
NTILDQAPQT ESFERPSKQL KTNSWNSCAT TTPNDQISTK ASSSSSSQFI SFEKYANSAS  120
ATPENKKYYN DLDVTTTTIT TTLNVKPKDE PGFNGYNMVF QSPYETRNCS PNKYGQGVKR  180
PLGVSTTRSP LHAQDHVMAE RKRREKLSQR FIALSAVVPG LKKMDKASVL GDAIKYIKNL  240
QERLSTLEER SAKKTVESVV FIKRSHLSAD DETSSSDENF DSNSNQPLPE IEAKVSDKDV  300
LIRIHCEKHK GCLANILSQV EKLNLTIFNS SVLPFGGSTI HITIVAKMDV EYNMKVKDLV  360
RNIRQALLRN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-13195248861Transcription factor MYC2
5gnj_B8e-13195248861Transcription factor MYC2
5gnj_E8e-13195248861Transcription factor MYC2
5gnj_F8e-13195248861Transcription factor MYC2
5gnj_G8e-13195248861Transcription factor MYC2
5gnj_I8e-13195248861Transcription factor MYC2
5gnj_M8e-13195248861Transcription factor MYC2
5gnj_N8e-13195248861Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204ERKRRE
2200205RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105102.11e-147transcription factor bHLH18
SwissprotQ1PF165e-62BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A2P5FHA10.0A0A2P5FHA1_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010105102.11e-147(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]