PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033527.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 775aa    MW: 86962.1 Da    PI: 4.556
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033527.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.7e-11622663346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rW++ + el+++av+q+G++ ++ I + ++ +Rt++q+k+++ k
  HL.SW.v1.0.G033527.1 622 RWSKHDTELFYEAVRQMGTD-FTIIQQLFP-NRTREQVKLKFKK 663
                           9*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.9E-28613696No hitNo description
PROSITE profilePS512939.807618666IPR017884SANT domain
SMARTSM007175.0E-10619667IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-6620663IPR009057Homeodomain-like
SuperFamilySSF466892.62E-10621669IPR009057Homeodomain-like
CDDcd001671.28E-7622663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MQLDVDPLDD LLSESKTNNS HKFRPKMKAQ PRKGVTRGVA SDLPNLMDRP VLGSIQEDPL  60
QSAVQGSLQS VDSRAMTEKS LSKDSIFQDS LQSVESIAMT GKSHSIDPLH SEDVVSDGNG  120
DWQSSFGKSL GENADIFSGL ECLDDFITQT TSGPGSEASK SQSKVHMDEQ HSDKFLTSYG  180
VNNNVEGPIS TSHMETRSEE NLSAPAHQSF DSSSFTICDV ATSQICTDYH STQDPVSFSE  240
TAVSNELEEA QINDGRSKTM VAEDLFDFEM YEGTIASGQH AGKFQPKPKL GKGKKKPSTN  300
ELQADVTSGV PLPAVHNVPL DQGYEQESSV LEFPSEGILD YSSATFDDSI SLDPISEIQD  360
DVEPTNLAKA THSEVVEDDP VMEEVDGKSK IGESSTEPNG LRRSKRSAAM QDIEGRESSK  420
QQREDLRQLS DDPVDEVHDL SGSVCDPPCT SNRDEEEDND EEYRVDSTSK KKKATRKVKE  480
PVPGKEKPVR KRKSSKQASE EQTKEPPKKF PHSTRRKKRM VDKALLDMPE DEIDPLRLPI  540
KDLILLAEHR ERMAIKDAAK LKTPQTNQSA NDSFREDVSH NEEMFHSDQG QHFDDDQPTY  600
RAQSSSTYVN YHSFMDKTPS TRWSKHDTEL FYEAVRQMGT DFTIIQQLFP NRTREQVKLK  660
FKKEERQHPL RLSDALTNRT KDHSHFKSVI KRLQELAAQA KQEANGNESN WFPGEEEVEE  720
PTQNANEEHT KSELDEVVKD QEQEAEVTNV QNSPLKYDEG EEDDPDRWNS YDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C2e-1259470956169Transcription factor TFIIIB component B'' homolog
5n9g_H2e-1259470956169Transcription factor TFIIIB component B'' homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470492KKKATRKVKEPVPGKEKPVRKRK
2486492KPVRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027250.10.0uncharacterized protein LOC21392104
TrEMBLA0A2P5DVP60.0A0A2P5DVP6_TREOI; TFIIIB transcription factor
STRINGXP_010105352.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-43MYB_related family protein