PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033360.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 548aa    MW: 60024 Da    PI: 7.3238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033360.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.68.4e-17354400455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  HL.SW.v1.0.G033360.1 354 VHNLSERRRRDRINEKMKALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 400
                           6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20347414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.254350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.33E-18353404No hitNo description
Gene3DG3DSA:4.10.280.109.5E-20354408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-14354400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-18356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MNNIPDWNFD GDLPVNGQKN LTGANHDLVE LLWRNGQVVL QSQTHRKASL GPNESRQVQK  60
NDQQAMRTGG SYGNSINMVQ DDDAVPWIHY PLEDAFEKDF CSNFFSELPS CDPIDIDKSI  120
RHIDEERLSK FGGSDTTHAL STSQHHKLKP SSNGAVPCPE NHHMPPPRLH YSNSTHQKQN  180
LGPLGKVVNF SQFSTMGKCD VRPQQHVAVK ETGTQGEVRE CSVMTVGLSH CGSNQLAADL  240
DVSWVSSNNG DGTTGLSAGA FKDDVQKILP RSESGKTETL EPTVTSSSGG SGSSFGRTCK  300
QSTATTGAKN NNKRKNRDAE ELECQSDVAE HESAAANKSS QRSGSSRKSR AAEVHNLSER  360
RRRDRINEKM KALQELIPHS NKTDKASMLD EAIEYLKSLQ LQLQVMWMGS GMAPMMFPGV  420
QHYMSRLGMG MGPPALPSIH NPMHLPRVPV VDQSMLGPPT TDQSVLCQTP AFNPINYQNQ  480
MQNASFQEQY ARYLGFHPMQ TVSQPMNLFR FNPQALQQSQ SIAQQGISTA PSNSGIPTNG  540
ALTGKMG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093193.20.0transcription factor PIF4 isoform X1
RefseqXP_024019248.10.0transcription factor PIF4 isoform X2
TrEMBLA0A2P5EVY10.0A0A2P5EVY1_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010093193.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.47e-39phytochrome interacting factor 3-like 6