PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G033230.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C2H2

Protein Properties

Length: 348aa MW: 38487.1 Da PI: 7.7095

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G033230.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H HL.SW.v1.0.G033230.1 146 YECKTCNRSFPSFQALGGHRASH 168 99**********99999998887 PP
2	zf-C2H2	13.1	0.00028	242	264	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H HL.SW.v1.0.G033230.1 242 HECSICGSEFTSGQALGGHMRRH 264 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.81E-5	145	174	No hit	No description
Pfam	PF13912	2.5E-13	145	170	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.06	146	168	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.388	146	173	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	148	168	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.83E-6	239	267	No hit	No description
Pfam	PF13912	3.4E-11	241	266	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	242	264	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.388	242	269	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	244	264	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEEVEVVVSH EQDHNNHNHH QQQMNILMKG KRTKRQRQPS SPLTATATAT ATAAASTSSS 60 SANYSFSSPT TSSAGGGGGG GGGGESTTTD QEEEQDMANC LILLAQGDHL RRRHRRRHRR 120 KETPLLTATT TTTVTPSNDT KGFYVYECKT CNRSFPSFQA LGGHRASHKK PKLFSDDKKS 180 LHPISTAAAA EEFYEEDQEV VEDDPNPHPH PHPLPHHHHH QEVLVFNKTT TSFNNKQANK 240 VHECSICGSE FTSGQALGGH MRRHRAHNSS STTTIATTNN SSSFHSLPQH PNKVQRNILS 300 LDLNLPAPEE DHNHNHHHHH HRESKFQFAP TQQALVFSAP ALVDCHY*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEEVEVVVSH EQDHNNHNHH QQQMNILMKG KRTKRQRQPS SPLTATATAT ATAAASTSSS  60
SANYSFSSPT TSSAGGGGGG GGGGESTTTD QEEEQDMANC LILLAQGDHL RRRHRRRHRR  120
KETPLLTATT TTTVTPSNDT KGFYVYECKT CNRSFPSFQA LGGHRASHKK PKLFSDDKKS  180
LHPISTAAAA EEFYEEDQEV VEDDPNPHPH PHPLPHHHHH QEVLVFNKTT TSFNNKQANK  240
VHECSICGSE FTSGQALGGH MRRHRAHNSS STTTIATTNN SSSFHSLPQH PNKVQRNILS  300
LDLNLPAPEE DHNHNHHHHH HRESKFQFAP TQQALVFSAP ALVDCHY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	119	RRHRRRHRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-46	C2H2 family protein